Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VUK78_RS12515 Genome accession   NZ_CP150467
Coordinates   422152..422796 (-) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio harveyi strain NH-LM1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 417152..427796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUK78_RS12505 (VUK78_12505) uvrA 418158..420980 (-) 2823 WP_340700165.1 excinuclease ABC subunit UvrA -
  VUK78_RS12510 (VUK78_12510) galU 421118..421990 (-) 873 WP_340700166.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VUK78_RS12515 (VUK78_12515) qstR 422152..422796 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  VUK78_RS12520 (VUK78_12520) ssb 423091..423630 (+) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  VUK78_RS12525 (VUK78_12525) csrD 423882..425891 (+) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  VUK78_RS12530 (VUK78_12530) - 425903..427351 (+) 1449 WP_340700167.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=970407 VUK78_RS12515 WP_009698824.1 422152..422796(-) (qstR) [Vibrio harveyi strain NH-LM1]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=970407 VUK78_RS12515 WP_009698824.1 422152..422796(-) (qstR) [Vibrio harveyi strain NH-LM1]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGCTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACCTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment