Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VUK15_RS19965 Genome accession   NZ_CP150462
Coordinates   3143092..3144624 (-) Length   510 a.a.
NCBI ID   WP_340642142.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. piscicida strain NH-LM2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3138092..3149624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUK15_RS19940 (VUK15_19940) - 3139142..3139315 (+) 174 WP_005302173.1 hypothetical protein -
  VUK15_RS19945 (VUK15_19945) - 3139491..3139757 (+) 267 WP_005302176.1 YihD family protein -
  VUK15_RS19950 (VUK15_19950) ccoG 3139946..3141283 (+) 1338 WP_106142305.1 cytochrome c oxidase accessory protein CcoG -
  VUK15_RS19955 (VUK15_19955) - 3141326..3142315 (+) 990 WP_340642141.1 serine/threonine protein kinase -
  VUK15_RS19960 (VUK15_19960) - 3142405..3143004 (+) 600 WP_370466075.1 thiol:disulfide interchange protein DsbA/DsbL -
  VUK15_RS19965 (VUK15_19965) comM 3143092..3144624 (-) 1533 WP_340642142.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VUK15_RS19970 (VUK15_19970) ilvG 3145164..3146810 (+) 1647 WP_340642143.1 acetolactate synthase 2 catalytic subunit -
  VUK15_RS19975 (VUK15_19975) ilvM 3146813..3147070 (+) 258 WP_036764608.1 acetolactate synthase 2 small subunit -
  VUK15_RS19980 (VUK15_19980) - 3147110..3148039 (+) 930 WP_065171002.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55177.50 Da        Isoelectric Point: 8.2787

>NTDB_id=970391 VUK15_RS19965 WP_340642142.1 3143092..3144624(-) (comM) [Photobacterium damselae subsp. piscicida strain NH-LM2]
MSLAIVHSRACVGVQAPAVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQQSLSLRFQTKPDDDLLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKTRVNQARTLMDQRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=970391 VUK15_RS19965 WP_340642142.1 3143092..3144624(-) (comM) [Photobacterium damselae subsp. piscicida strain NH-LM2]
ATGTCATTGGCCATTGTGCATAGCCGGGCTTGCGTTGGGGTACAAGCTCCAGCAGTCACTGTTGAAGTTCATTTAAGTAA
TGGAATGCCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTCGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCTCGGCGAATTACCGTCAATTTAGCGCCCGCTGATTTGCCTAAAGAAGGGGGCCGA
TTTGACTTACCCATCGCGCTTGGAATTTTAGCTGCTTCAGGACAAATACCCGCAGAATCACTGCATAAATACGAATTTTT
AGGGGAGTTAGCTTTATCAGGGCAATTGCGTCCGGTAAAGGGGGCACTGCCTGCTGCTCTTGCTGCATTAAAGGCTAAAA
GGTGTTTGATTGTCCCTGATCGTAATGGCGATCAAGTGGCATTAGTAGGTGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCTCACCTATTAGGACAGCAAAGTTTATCTTTACGGTTTCAAACAAAACCCGATGATGATTTGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGCGCATTGGAAATCGCAGCTGCTGGTG
GCCATAATCTTCTGTTTCTTGGGCCGCCAGGAACGGGAAAAACCATGTTAGCCTCTCGGTTATGTGATTTATTACCTCCC
ATGAGCCATGATGAGGCGTTAGAAACTGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGTTACA
ACGACCGCTACGTGCACCTCATCATTCAAGTTCTATGGCTGCCTTAGTTGGAGGTGGTTCAATTCCAAGGCCAGGAGAGA
TCTCTTTGGCGCATAATGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGAGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCTCGGGCAACCAGTAAAGCAACCTTTCCAGCAAATTTTCAATTGATTGGAGC
GCTAAATCCGAGTCCAACAGGATTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AGCTCTCCGGCCCGCTGCTTGATAGGTTTGATATGTCGATTGAGATCCCAGCTCTGCCGAAAGGTACTTTAGCTCAAGGT
GGTGAGCGCGGTGAGAGTACTCCAGTGATTAAAACGCGAGTTAATCAGGCGCGAACCTTAATGGATCAGCGAGCAGGAAA
AGTGAATGCTCGACTTTCGACTCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CACTGCATCAGTTGGGGCTATCGATTCGTGCGTACCACCGTATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCGTTAGGATATCGAGCGATGGATCGGTTATTGAAGCAGTTAACGGC
TCAAGCGATATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.667

100

0.767
  comM Vibrio cholerae strain A1552

76.471

100

0.765
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.525

99.412

0.622
  comM Legionella pneumophila str. Paris

49.9

97.843

0.488
  comM Legionella pneumophila strain ERS1305867

49.9

97.843

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.941

100

0.429

Multiple sequence alignment