Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHI53_RS24985 Genome accession   NZ_CP150304
Coordinates   5166356..5166886 (-) Length   176 a.a.
NCBI ID   WP_061141436.1    Uniprot ID   A0A2M9P1C9
Organism   Peribacillus sp. FSL E2-0218     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5161356..5171886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI53_RS24965 (MHI53_24965) rplI 5162457..5162906 (-) 450 WP_100531213.1 50S ribosomal protein L9 -
  MHI53_RS24970 (MHI53_24970) - 5162903..5164873 (-) 1971 WP_061141434.1 DHH family phosphoesterase -
  MHI53_RS24975 (MHI53_24975) - 5164910..5165857 (-) 948 WP_340372547.1 YybS family protein -
  MHI53_RS24980 (MHI53_24980) rpsR 5166069..5166308 (-) 240 WP_053348323.1 30S ribosomal protein S18 -
  MHI53_RS24985 (MHI53_24985) ssbA 5166356..5166886 (-) 531 WP_061141436.1 single-stranded DNA-binding protein Machinery gene
  MHI53_RS24990 (MHI53_24990) rpsF 5166953..5167237 (-) 285 WP_061141437.1 30S ribosomal protein S6 -
  MHI53_RS24995 (MHI53_24995) ychF 5167420..5168520 (-) 1101 WP_100530567.1 redox-regulated ATPase YchF -
  MHI53_RS25000 (MHI53_25000) - 5168688..5168885 (-) 198 WP_057914158.1 DUF951 domain-containing protein -
  MHI53_RS25005 (MHI53_25005) - 5168906..5169742 (-) 837 WP_061141439.1 mechanosensitive ion channel family protein -
  MHI53_RS25010 (MHI53_25010) yyaC 5170123..5170758 (+) 636 WP_061141440.1 spore protease YyaC -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19491.15 Da        Isoelectric Point: 4.8282

>NTDB_id=970127 MHI53_RS24985 WP_061141436.1 5166356..5166886(-) (ssbA) [Peribacillus sp. FSL E2-0218]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQSGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPF
ANDGKTIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=970127 MHI53_RS24985 WP_061141436.1 5166356..5166886(-) (ssbA) [Peribacillus sp. FSL E2-0218]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTACCTGTAGC
AACCTTTACTTTAGCTGTGAACCGTAGTTTTACGAATCAGTCAGGTGAACGTGAAGCAGATTTCATTAATTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAAGGCAGTTTGGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAGTTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGGGGTCAAAGAAGTTATGGTAACAATAATAACGGAAATG
ACAATAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCATTT
GCAAATGACGGTAAGACCATCGACATTTCAGATGACGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2M9P1C9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.274

100

0.705
  ssb Latilactobacillus sakei subsp. sakei 23K

56.18

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.227

0.381
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.381

Multiple sequence alignment