Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   ACJVG6_RS10220 Genome accession   NZ_CP177180
Coordinates   2137866..2139101 (+) Length   411 a.a.
NCBI ID   WP_002887124.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2132866..2144101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS10190 - 2133473..2135927 (+) 2455 Protein_1950 YfhO family protein -
  ACJVG6_RS10210 - 2136482..2137165 (-) 684 WP_002883977.1 YoaK family protein -
  ACJVG6_RS10215 rlmH 2137181..2137660 (-) 480 WP_002887123.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ACJVG6_RS10220 htrA 2137866..2139101 (+) 1236 WP_002887124.1 S1C family serine protease Regulator
  ACJVG6_RS10225 spo0J 2139167..2139934 (+) 768 WP_002887125.1 ParB/RepB/Spo0J family partition protein Regulator
  ACJVG6_RS10230 ssb 2140081..2140509 (-) 429 WP_002887131.1 single-stranded DNA-binding protein -
  ACJVG6_RS10235 - 2141497..2142414 (-) 918 WP_002887133.1 FRG domain-containing protein -
  ACJVG6_RS10240 - 2142486..2142764 (-) 279 WP_002887136.1 hypothetical protein -
  ACJVG6_RS10245 - 2142747..2143085 (-) 339 Protein_1958 recombinase zinc beta ribbon domain-containing protein -

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42943.14 Da        Isoelectric Point: 4.6266

>NTDB_id=969652 ACJVG6_RS10220 WP_002887124.1 2137866..2139101(+) (htrA) [Streptococcus salivarius strain MRD-KRBY]
MKKFNWKKIVAPIAMLIIGLLGGLLGAFILLTAAGVSFTNTTDTGVKTAKTVYNNTTDTTKAVKKVQNAVVSVINYQEGS
SSDSLNELYGRIFGGDDSSDSSQDKSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKIKTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTVTMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISMADLNSLS
SSATSKLDLPDDVKAGVVVGSVQKGMPADGKLQENDVITEIDGKEISSKTDIQTNLYSHSIGDTIKVTFYRGKEKKTEEL
KLTKSTEDLSD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=969652 ACJVG6_RS10220 WP_002887124.1 2137866..2139101(+) (htrA) [Streptococcus salivarius strain MRD-KRBY]
GTGAAAAAATTTAACTGGAAAAAAATAGTAGCGCCAATTGCAATGCTTATTATTGGCTTACTAGGTGGTTTACTAGGTGC
CTTTATCCTACTAACAGCAGCAGGGGTATCTTTTACCAATACAACAGATACAGGTGTAAAAACAGCTAAGACCGTATACA
ATAATACAACAGATACAACTAAAGCCGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTACCAAGAAGGGTCA
TCTTCAGATTCTCTAAATGAACTTTATGGCCGTATCTTTGGTGGAGATGATAGTTCTGACTCTAGCCAAGACAAATCAAA
AGATTCTGATGGGTTGCAAGTCGCTGGTGAAGGTTCCGGTGTTATCTATAAAAAGGATGGTAAAGAGGCTTATATCGTAA
CCAACAACCACGTTGTCGATGGCGCTAAAAAACTTGAAATCATGCTTTCAGATGGATCAAAAATTACTGGTGAACTCGTT
GGTAAAGATACTTACTCTGACCTAGCAGTTGTCAAAGTTTCTTCAGATAAAATTAAAACCGTAGCAGAATTTGCAGACTC
AAACTCTCTCACAGTCGGTGAGAAGGCAATTGCTATCGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAGG
GAATCGTTTCTAGCCTTAGCCGTACCGTAACTATGCAAAACGACAATGGTGAAACTGTTTCAACAAATGCTATTCAAACA
GATGCTGCCATTAACCCTGGTAACTCAGGTGGTGCCTTAGTCAATATCGAAGGACAAGTCATCGGTATTAACTCAAGTAA
AATTTCATCAACGTCAGCAGTCGCTGGTAGCGCCGTTGAAGGTATGGGATTTGCCATTCCATCAAACGATGTTGTCGAAA
TCATCAATCAATTGGAAAAAGACGGTAAAGTTACACGACCAGCCCTAGGAATCTCAATGGCCGATCTTAATAGCCTTTCT
AGCAGTGCAACTTCTAAATTAGATTTACCAGATGATGTGAAAGCTGGAGTTGTAGTCGGCAGCGTTCAAAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAAAATGATGTTATCACTGAAATTGACGGTAAGGAAATCAGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATTGGAGATACAATCAAGGTAACCTTCTATCGTGGTAAAGAGAAGAAAACTGAAGAACTT
AAATTAACAAAATCTACAGAAGACTTGTCTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.538

98.054

0.603

  htrA Streptococcus gordonii str. Challis substr. CH1

57.524

100

0.577

  htrA Streptococcus mitis NCTC 12261

54.279

99.513

0.54

  htrA Streptococcus pneumoniae TIGR4

54.034

99.513

0.538

  htrA Streptococcus pneumoniae D39

54.034

99.513

0.538

  htrA Streptococcus pneumoniae Rx1

54.034

99.513

0.538

  htrA Streptococcus pneumoniae R6

54.034

99.513

0.538