Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OO778_RS01910 Genome accession   NZ_AP026765
Coordinates   407110..407652 (+) Length   180 a.a.
NCBI ID   WP_258615631.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 402110..412652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS01895 (VspSTUT16_03160) uvrA 402185..405007 (-) 2823 WP_074191833.1 excinuclease ABC subunit UvrA -
  OO778_RS01900 (VspSTUT16_03170) galU 405157..406029 (-) 873 WP_074191834.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OO778_RS01905 (VspSTUT16_03180) qstR 406188..406832 (-) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  OO778_RS01910 (VspSTUT16_03190) ssb 407110..407652 (+) 543 WP_258615631.1 single-stranded DNA-binding protein Machinery gene
  OO778_RS01915 (VspSTUT16_03200) csrD 407895..409904 (+) 2010 WP_048626836.1 RNase E specificity factor CsrD -
  OO778_RS01920 (VspSTUT16_03210) - 409916..411361 (+) 1446 WP_264910643.1 MSHA biogenesis protein MshI -
  OO778_RS01925 (VspSTUT16_03220) gspM 411358..412008 (+) 651 WP_047009166.1 type II secretion system protein GspM -
  OO778_RS01930 (VspSTUT16_03230) - 412001..412333 (+) 333 WP_046873588.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20079.10 Da        Isoelectric Point: 4.9164

>NTDB_id=96839 OO778_RS01910 WP_258615631.1 407110..407652(+) (ssb) [Vibrio sp. STUT-A16]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQQQQAP
QQQQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=96839 OO778_RS01910 WP_258615631.1 407110..407652(+) (ssb) [Vibrio sp. STUT-A16]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAACGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTTGGCGGTCGTGGTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAGCAACAACAGCAGGCTCCG
CAGCAACAACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

78.804

100

0.806
  ssb Glaesserella parasuis strain SC1401

55.851

100

0.583
  ssb Neisseria meningitidis MC58

45.198

98.333

0.444
  ssb Neisseria gonorrhoeae MS11

45.198

98.333

0.444

Multiple sequence alignment