Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OO778_RS01905 Genome accession   NZ_AP026765
Coordinates   406188..406832 (-) Length   214 a.a.
NCBI ID   WP_005397417.1    Uniprot ID   A0AAQ2J3W0
Organism   Vibrio sp. STUT-A16     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 401188..411832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS01895 (VspSTUT16_03160) uvrA 402185..405007 (-) 2823 WP_074191833.1 excinuclease ABC subunit UvrA -
  OO778_RS01900 (VspSTUT16_03170) galU 405157..406029 (-) 873 WP_074191834.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OO778_RS01905 (VspSTUT16_03180) qstR 406188..406832 (-) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  OO778_RS01910 (VspSTUT16_03190) ssb 407110..407652 (+) 543 WP_258615631.1 single-stranded DNA-binding protein Machinery gene
  OO778_RS01915 (VspSTUT16_03200) csrD 407895..409904 (+) 2010 WP_048626836.1 RNase E specificity factor CsrD -
  OO778_RS01920 (VspSTUT16_03210) - 409916..411361 (+) 1446 WP_264910643.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24483.41 Da        Isoelectric Point: 9.7165

>NTDB_id=96838 OO778_RS01905 WP_005397417.1 406188..406832(-) (qstR) [Vibrio sp. STUT-A16]
MRKSAYARKLFLISMEDNAQKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGLFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=96838 OO778_RS01905 WP_005397417.1 406188..406832(-) (qstR) [Vibrio sp. STUT-A16]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAGGTGGCGGCACTCGA
AAAGTACATTGATATGAGTATCCCGGTGATTTCGACCGAAGCACTCATGGAAGCTAAGCCACAGCATCGTAATAAAATCC
TACTGATCGACTTCAGTGAACATAAATCACTCGTTCAATCGATCAAAAACTTACCGCTGGTATGGAAGAACTTTGAAACC
GTTGTGTTCAATGTCCCTAAAAGGCTGACCACGGATGAGCTTCTTTCATTTGGTCAATTAAAGGGGCTGTTCTATTCCGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAGGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGTAACGTCATTAACACTCATACTGCCCCAGCCACGGTAGACCTAACCATTCGCGAGCTGCAA
GTACTGCGTTGCTTGCAAGCTGGCGCATCGAACAGCCAAATGGCCGAGGAATTATTTGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCAGTGAAGAATCGCGTTCAGGCTATCGCGTGGGCAGATCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.794

100

0.958
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment