Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OO774_RS15565 Genome accession   NZ_AP026763
Coordinates   3339188..3340711 (-) Length   507 a.a.
NCBI ID   WP_264903492.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3334188..3345711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS15545 (VspSTUT11_29440) - 3335416..3336402 (+) 987 WP_264906122.1 serine/threonine protein kinase -
  OO774_RS15550 (VspSTUT11_29450) - 3336436..3337038 (+) 603 WP_264903487.1 thiol:disulfide interchange protein DsbA/DsbL -
  OO774_RS15555 (VspSTUT11_29460) - 3337082..3337960 (-) 879 WP_264903488.1 acyltransferase -
  OO774_RS15560 (VspSTUT11_29470) - 3338200..3339156 (+) 957 WP_264903490.1 DUF2860 domain-containing protein -
  OO774_RS15565 (VspSTUT11_29480) comM 3339188..3340711 (-) 1524 WP_264903492.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OO774_RS15570 (VspSTUT11_29490) ilvG 3341179..3342825 (+) 1647 WP_264903493.1 acetolactate synthase 2 catalytic subunit -
  OO774_RS15575 (VspSTUT11_29500) ilvM 3342837..3343121 (+) 285 WP_014233403.1 acetolactate synthase 2 small subunit -
  OO774_RS15580 (VspSTUT11_29510) ilvD 3343288..3345129 (+) 1842 WP_264903496.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55081.07 Da        Isoelectric Point: 8.7759

>NTDB_id=96827 OO774_RS15565 WP_264903492.1 3339188..3340711(-) (comM) [Vibrio sp. STUT-A11]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAASKFQRHLVVPHANGDQAALVAKEQHKSAQSL
LEVCAELCGQHRLSLHQAPERIMSQNHNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKRRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKALDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSQGGDR
GEPTAVVKERVYDARQNMLSRSGKVNALLGSREIETFCPLLKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGEGR
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=96827 OO774_RS15565 WP_264903492.1 3339188..3340711(-) (comM) [Vibrio sp. STUT-A11]
ATGGGGCTGGCAATTATTCATAGTCGGGCAAGCGTCGGTGTTCAGGCACCGTCAGTTAGTGTGGAAGTACATATTAGTAA
CGGTATGCCGGGCTTTACTTTGGTTGGGTTACCAGAAACCACGGTAAAAGAGTCTAAAGATCGGGTACGTAGTGCCATCA
TTAATTCTAATTTTCAATTTCCCGCCAAACGCATTACGGTCAACTTAGCTCCGGCGGATCTACCCAAAGAGGGCGGACGT
TTTGATTTACCCATTGCGCTGGGTATTTTGGCCGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGCGAGTTAGCCTTGTCTGGAGGCTTAAGGCCAGTAAAAGGCGTGCTACCTGCAGCGCTCGCCGCAAGCAAGTTTCAGC
GCCACTTGGTCGTGCCACATGCGAATGGTGATCAGGCGGCGCTGGTGGCTAAAGAGCAGCATAAGTCTGCTCAGTCGTTG
CTTGAGGTGTGTGCTGAATTGTGCGGTCAGCATAGGCTGAGTTTGCATCAAGCGCCTGAGAGAATTATGTCACAAAACCA
TAACCGCGATCTGCAAGACATTATCGGCCAGCAGCAGGGAAAGCGGGCTTTGGAGATCGCGGCGGCAGGTAACCATAACT
TATTATTTTTAGGGCCACCCGGTACCGGAAAAACCATGTTAGCGTCGCGCTTATGCGATTTGTTACCTGAAATGAGTGAT
GAGGAAGCGATGGAAACCGCGTCCGTCGCATCACTGACACAAAGCGAAATCAATGAACATAACTGGAAGCGACGACCGTT
TCGTTCTCCACACCACTCCAGTTCTATGGCGGCATTGGTCGGCGGTGGCTCGGTGCCAAGGCCGGGTGAGATTTCATTGG
CCCACAATGGCCTATTATTTCTCGATGAAATGCCGGAATTTGATCGTAAAGCTTTGGACTCGTTACGAGAGCCACTGGAA
TCGGGAGAAATCATCATCTCTCGGGCTCAGGGCAAAACCCGTTTTCCTGCCCGCTTTCAGCTGGTGGGCGCACTCAACCC
CAGCCCGACAGGTTATTACGAAGGCAATCAGGCTCGTACTAATCCACAAGCCATTCTGCGCTATTTAGGTCGCTTATCAG
GACCGTTACTGGATCGATTTGATATGTCGTTAGAAATTCCGGCGTTGCCTAAAGGCACATTATCGCAGGGAGGTGACCGA
GGAGAGCCTACAGCAGTCGTTAAAGAGCGGGTTTATGACGCTCGCCAGAACATGTTAAGCCGTAGTGGCAAGGTAAATGC
CTTGCTGGGGAGCCGTGAGATAGAGACGTTTTGCCCACTGCTAAAAAGTGATGCTGAGTTTCTGGAGACCGCTTTGCACA
GGTTAGGGCTGTCTATTCGCGCGTATCACCGAATCATTAAAGTGGCCCGTACGATTGCCGATCTGGATGGGGAAGGGCGG
ATTGAACGCTCCCACCTAGCGGAAGCCCTTGGATATCGTGCTATGGACCGATTACTGAAACAGCTTACTGCTCAGGCTGT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

92.899

100

0.929
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

65.619

100

0.659
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.899

98.028

0.489
  comM Legionella pneumophila strain ERS1305867

49.899

98.028

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.615

100

0.438

Multiple sequence alignment