Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACK2V4_RS14850 Genome accession   NZ_CP176646
Coordinates   3185080..3186192 (-) Length   370 a.a.
NCBI ID   WP_062855553.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GTVSS-031     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3180080..3191192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2V4_RS14820 (ACK2V4_14820) hemF 3180541..3181458 (-) 918 WP_021449063.1 oxygen-dependent coproporphyrinogen oxidase -
  ACK2V4_RS14825 (ACK2V4_14825) - 3181506..3182063 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  ACK2V4_RS14830 (ACK2V4_14830) purE 3182263..3182748 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACK2V4_RS14835 (ACK2V4_14835) - 3182753..3183880 (+) 1128 WP_062855552.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACK2V4_RS14840 (ACK2V4_14840) - 3183950..3184519 (-) 570 WP_021449061.1 type I DNA topoisomerase -
  ACK2V4_RS14845 (ACK2V4_14845) - 3184598..3185077 (-) 480 WP_005461440.1 DUF494 family protein -
  ACK2V4_RS14850 (ACK2V4_14850) dprA 3185080..3186192 (-) 1113 WP_062855553.1 DNA-processing protein DprA Machinery gene
  ACK2V4_RS14855 (ACK2V4_14855) - 3186176..3187270 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  ACK2V4_RS14860 (ACK2V4_14860) def 3187409..3187927 (+) 519 WP_005461416.1 peptide deformylase -
  ACK2V4_RS14865 (ACK2V4_14865) fmt 3187961..3188908 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  ACK2V4_RS14870 (ACK2V4_14870) rsmB 3188989..3190272 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39909.53 Da        Isoelectric Point: 6.5002

>NTDB_id=968102 ACK2V4_RS14850 WP_062855553.1 3185080..3186192(-) (dprA) [Vibrio parahaemolyticus strain GTVSS-031]
MKPRNSDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTHKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=968102 ACK2V4_RS14850 WP_062855553.1 3185080..3186192(-) (dprA) [Vibrio parahaemolyticus strain GTVSS-031]
ATGAAACCACGCAATAGCGACAGTGACCTTGCTGCCTGGCTGAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGC
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

58.808

99.73

0.586
  dprA Vibrio cholerae strain A1552

58.808

99.73

0.586
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

38.035

100

0.408
  dprA Neisseria meningitidis MC58

38.035

100

0.408
  dprA Neisseria gonorrhoeae MS11

35.949

100

0.384
  dprA Neisseria gonorrhoeae strain FA1090

35.696

100

0.381

Multiple sequence alignment