Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MKZ05_RS16180 Genome accession   NZ_CP150255
Coordinates   3182861..3183550 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL M8-0277     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3177861..3188550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ05_RS16145 (MKZ05_16145) - 3177939..3178421 (-) 483 WP_050944342.1 flagellar protein FlgN -
  MKZ05_RS16150 (MKZ05_16150) flgM 3178440..3178703 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKZ05_RS16155 (MKZ05_16155) - 3178783..3179202 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  MKZ05_RS16160 (MKZ05_16160) comFC 3179259..3179945 (-) 687 WP_212045588.1 ComF family protein Machinery gene
  MKZ05_RS16165 (MKZ05_16165) - 3179942..3180235 (-) 294 WP_106066158.1 late competence development ComFB family protein -
  MKZ05_RS16170 (MKZ05_16170) comFA 3180302..3181426 (-) 1125 WP_339160557.1 DEAD/DEAH box helicase Machinery gene
  MKZ05_RS16175 (MKZ05_16175) - 3181801..3182643 (-) 843 WP_226804196.1 DegV family protein -
  MKZ05_RS16180 (MKZ05_16180) degU 3182861..3183550 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MKZ05_RS16185 (MKZ05_16185) degS 3183615..3184790 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MKZ05_RS16190 (MKZ05_16190) - 3185012..3185680 (+) 669 WP_003212936.1 YigZ family protein -
  MKZ05_RS16195 (MKZ05_16195) - 3185665..3186717 (+) 1053 WP_339160560.1 LCP family protein -
  MKZ05_RS16200 (MKZ05_16200) - 3186752..3187819 (-) 1068 WP_003212692.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=968103 MKZ05_RS16180 WP_008348273.1 3182861..3183550(-) (degU) [Bacillus sp. FSL M8-0277]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=968103 MKZ05_RS16180 WP_008348273.1 3182861..3183550(-) (degU) [Bacillus sp. FSL M8-0277]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGATGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment