Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OO774_RS01750 | Genome accession | NZ_AP026763 |
| Coordinates | 373853..374392 (+) | Length | 179 a.a. |
| NCBI ID | WP_264904144.1 | Uniprot ID | - |
| Organism | Vibrio sp. STUT-A11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 368853..379392
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO774_RS01735 (VspSTUT11_02890) | uvrA | 368908..371730 (-) | 2823 | WP_264904141.1 | excinuclease ABC subunit UvrA | - |
| OO774_RS01740 (VspSTUT11_02900) | galU | 371879..372751 (-) | 873 | WP_264904142.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| OO774_RS01745 (VspSTUT11_02910) | qstR | 372931..373575 (-) | 645 | WP_264904143.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| OO774_RS01750 (VspSTUT11_02920) | ssb | 373853..374392 (+) | 540 | WP_264904144.1 | single-stranded DNA-binding protein | Machinery gene |
| OO774_RS01755 (VspSTUT11_02930) | csrD | 374629..376638 (+) | 2010 | WP_264904145.1 | RNase E specificity factor CsrD | - |
| OO774_RS01760 (VspSTUT11_02940) | - | 376650..378095 (+) | 1446 | WP_264904146.1 | MSHA biogenesis protein MshI | - |
| OO774_RS01765 (VspSTUT11_02950) | - | 378092..378742 (+) | 651 | WP_264904147.1 | type II secretion system protein M | - |
| OO774_RS01770 (VspSTUT11_02960) | - | 378735..379067 (+) | 333 | WP_264904148.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19728.85 Da Isoelectric Point: 5.2257
>NTDB_id=96796 OO774_RS01750 WP_264904144.1 373853..374392(+) (ssb) [Vibrio sp. STUT-A11]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQPSQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQPSQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=96796 OO774_RS01750 WP_264904144.1 373853..374392(+) (ssb) [Vibrio sp. STUT-A11]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGCAATGACCCTGAAATTCGCTACATGCCGAATGG
TGGTGCAGTAGCAAACATTACTATTGCGACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTAGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTACGCAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAACGGTCAAGACCGTTACTCAACTGAAGTTGTTGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGAGCTCAAGGTGGCGCACCAGCTATGGGCGGCCAGCCGTCACAGCAAGGTG
GTTGGGGTCAACCTCAGCAACCAGCGCAACCGCAATACAATGCGCCTCAACAACAGGCTCCAAAGCAATCGGCTCCACAG
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGCAATGACCCTGAAATTCGCTACATGCCGAATGG
TGGTGCAGTAGCAAACATTACTATTGCGACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTAGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTACGCAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAACGGTCAAGACCGTTACTCAACTGAAGTTGTTGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGAGCTCAAGGTGGCGCACCAGCTATGGGCGGCCAGCCGTCACAGCAAGGTG
GTTGGGGTCAACCTCAGCAACCAGCGCAACCGCAATACAATGCGCCTCAACAACAGGCTCCAAAGCAATCGGCTCCACAG
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80.328 |
100 |
0.821 |
| ssb | Glaesserella parasuis strain SC1401 |
57.143 |
100 |
0.603 |
| ssb | Neisseria meningitidis MC58 |
46.667 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
46.667 |
100 |
0.469 |