Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OO774_RS01745 Genome accession   NZ_AP026763
Coordinates   372931..373575 (-) Length   214 a.a.
NCBI ID   WP_264904143.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 367931..378575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS01735 (VspSTUT11_02890) uvrA 368908..371730 (-) 2823 WP_264904141.1 excinuclease ABC subunit UvrA -
  OO774_RS01740 (VspSTUT11_02900) galU 371879..372751 (-) 873 WP_264904142.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OO774_RS01745 (VspSTUT11_02910) qstR 372931..373575 (-) 645 WP_264904143.1 LuxR C-terminal-related transcriptional regulator Regulator
  OO774_RS01750 (VspSTUT11_02920) ssb 373853..374392 (+) 540 WP_264904144.1 single-stranded DNA-binding protein Machinery gene
  OO774_RS01755 (VspSTUT11_02930) csrD 374629..376638 (+) 2010 WP_264904145.1 RNase E specificity factor CsrD -
  OO774_RS01760 (VspSTUT11_02940) - 376650..378095 (+) 1446 WP_264904146.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24562.51 Da        Isoelectric Point: 9.7163

>NTDB_id=96795 OO774_RS01745 WP_264904143.1 372931..373575(-) (qstR) [Vibrio sp. STUT-A11]
MKKSAYARKLFLISMEENAHLKVSALENYIELDIPVISTDALMEAKPKHRNKILLIDFSEHKSLVQSIKNLPLMWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYAEESLERVGEGLKGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQNGASNSRMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=96795 OO774_RS01745 WP_264904143.1 372931..373575(-) (qstR) [Vibrio sp. STUT-A11]
ATGAAAAAGTCAGCTTATGCCAGAAAGCTATTTCTGATCAGTATGGAAGAGAATGCCCACCTGAAGGTATCAGCACTGGA
AAATTACATCGAGCTAGATATCCCAGTTATCTCGACGGATGCTTTAATGGAAGCGAAACCGAAACATCGTAATAAAATCT
TGCTCATCGATTTCAGTGAGCATAAGTCACTTGTTCAGTCGATTAAGAATTTACCACTGATGTGGAAAAACTTTGAAACG
GTTGTTTTTAATGTCCCTAAGCGTTTGACGACAGATGAACTGCTCTCTTTCGGTCAGCTAAAAGGCGTATTCTATGCTGA
GGAATCGCTTGAGCGAGTCGGTGAAGGGTTAAAAGGTATCATTAATGGCCAAAATTGGCTGCCACGAAATGTGTCCAGTC
AACTTCTTCACTATTATCGTAATGTCATCAATACTCATACTGCACCCGCGACCGTAGACCTTACCATTCGAGAACTACAA
GTGTTGCGCTGTCTTCAGAATGGGGCATCGAATAGCCGAATGGCAGAAGAGTTATTTGTGAGTGAGTTTACGATTAAATC
TCACCTGTACCAAATATTCAAAAAACTCTCTGTGAAGAACCGCGTACAAGCCATTGCTTGGGCAGATCAGAACCTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

89.72

100

0.897
  qstR Vibrio campbellii strain DS40M4

88.318

100

0.883
  qstR Vibrio cholerae strain A1552

53.738

100

0.537

Multiple sequence alignment