Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSQ38_RS05260 Genome accession   NZ_CP150219
Coordinates   1175663..1176148 (+) Length   161 a.a.
NCBI ID   WP_017691432.1    Uniprot ID   A0A5M9UHS8
Organism   Paenibacillus sp. FSL R7-0313     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1170663..1181148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ38_RS05220 (NSQ38_05220) - 1171676..1172176 (+) 501 WP_036671879.1 DUF4446 family protein -
  NSQ38_RS05225 (NSQ38_05225) yyaC 1172151..1172756 (-) 606 WP_036611957.1 spore protease YyaC -
  NSQ38_RS05230 (NSQ38_05230) - 1172874..1173137 (+) 264 WP_017691427.1 DUF3343 domain-containing protein -
  NSQ38_RS05235 (NSQ38_05235) - 1173152..1174090 (+) 939 WP_289390792.1 mechanosensitive ion channel family protein -
  NSQ38_RS05240 (NSQ38_05240) - 1174080..1174289 (+) 210 WP_036611950.1 DUF951 domain-containing protein -
  NSQ38_RS05250 (NSQ38_05250) - 1174924..1175118 (-) 195 WP_036671877.1 YjzC family protein -
  NSQ38_RS05255 (NSQ38_05255) rpsF 1175321..1175614 (+) 294 WP_036611944.1 30S ribosomal protein S6 -
  NSQ38_RS05260 (NSQ38_05260) ssbA 1175663..1176148 (+) 486 WP_017691432.1 single-stranded DNA-binding protein Machinery gene
  NSQ38_RS05265 (NSQ38_05265) rpsR 1176205..1176477 (+) 273 WP_017691433.1 30S ribosomal protein S18 -
  NSQ38_RS05270 (NSQ38_05270) - 1176706..1177299 (+) 594 WP_339787501.1 M15 family metallopeptidase -
  NSQ38_RS05275 (NSQ38_05275) - 1178027..1179016 (+) 990 WP_036671916.1 ABC transporter ATP-binding protein -
  NSQ38_RS05280 (NSQ38_05280) - 1179031..1179963 (+) 933 WP_091035246.1 ATP-binding cassette domain-containing protein -
  NSQ38_RS05285 (NSQ38_05285) opp4B 1179971..1180933 (+) 963 WP_091035248.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17806.63 Da        Isoelectric Point: 4.8369

>NTDB_id=966729 NSQ38_RS05260 WP_017691432.1 1175663..1176148(+) (ssbA) [Paenibacillus sp. FSL R7-0313]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEKEADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESANRDNSGGGGGQPMREEPSYGGGGRANNNNNSRSNNQDPFSDDGKPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=966729 NSQ38_RS05260 WP_017691432.1 1175663..1176148(+) (ssbA) [Paenibacillus sp. FSL R7-0313]
TTGTTGAACCGTGTCATTCTGATCGGCCGGTTAACCCGGGATCCTGAGTTGCGTTACACTCCAGCAGGAGTGGCAGTTAC
GCAATTTACTTTGGCAGTGGACAGACCGTTTACAAGCCAAGGGGGAGAAAAGGAAGCCGATTTCATTCCGGTCGTAACCT
GGAGACAGCTTGCCGAGACCTGTGCGAACTACTTGCGCAAAGGACGCCTGGCTGCAGTCGAAGGACGCATTCAAGTACGG
AACTACGAGAATAACGAAGGAAAACGTGTATACGTGACCGAAGTCATTGCCGATAATGTCCGTTTCTTGGAGTCAGCTAA
CCGTGATAATAGCGGTGGCGGCGGTGGGCAACCAATGCGTGAAGAGCCTTCTTATGGAGGCGGCGGACGCGCGAACAATA
ACAATAATTCGCGTAGCAACAATCAGGATCCTTTTTCTGATGACGGAAAACCGATTGATATATCGGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9UHS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.596
  ssb Latilactobacillus sakei subsp. sakei 23K

49.133

100

0.528
  ssb Neisseria meningitidis MC58

33.889

100

0.379
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.565

0.379
  ssb Neisseria gonorrhoeae MS11

33.146

100

0.366

Multiple sequence alignment