Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   NSQ79_RS01555 Genome accession   NZ_CP150200
Coordinates   288852..289541 (+) Length   229 a.a.
NCBI ID   WP_339313746.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W7-1342     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 283852..294541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ79_RS01530 (NSQ79_01530) - 284786..284914 (+) 129 Protein_248 energy-coupling factor transporter transmembrane protein EcfT -
  NSQ79_RS01535 (NSQ79_01535) - 285004..285675 (-) 672 WP_073686620.1 TrkA family potassium uptake protein -
  NSQ79_RS01540 (NSQ79_01540) - 285715..287079 (-) 1365 WP_111686475.1 potassium transporter TrkG -
  NSQ79_RS01545 (NSQ79_01545) rsmG 287148..287861 (-) 714 WP_013990060.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NSQ79_RS01550 (NSQ79_01550) - 288160..288696 (+) 537 WP_070579518.1 YceD family protein -
  NSQ79_RS01555 (NSQ79_01555) covR 288852..289541 (+) 690 WP_339313746.1 response regulator transcription factor Regulator
  NSQ79_RS01560 (NSQ79_01560) covS 289538..291067 (+) 1530 WP_002886591.1 HAMP domain-containing histidine kinase Regulator
  NSQ79_RS01565 (NSQ79_01565) nrdR 291189..291668 (+) 480 WP_002886592.1 transcriptional regulator NrdR -
  NSQ79_RS01570 (NSQ79_01570) - 291665..292840 (+) 1176 WP_013990063.1 DnaD domain protein -
  NSQ79_RS01575 (NSQ79_01575) dnaI 292844..293746 (+) 903 WP_013990064.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26530.51 Da        Isoelectric Point: 4.6354

>NTDB_id=966079 NSQ79_RS01555 WP_339313746.1 288852..289541(+) (covR) [Streptococcus sp. FSL W7-1342]
MSKRILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFEVTRRLQQEKDTYIMMMT
ARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRANFRRQDIESAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKRE
FDLLNTLLSNMNQVMTREELLLQVWKYDDAIETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=966079 NSQ79_RS01555 WP_339313746.1 288852..289541(+) (covR) [Streptococcus sp. FSL W7-1342]
ATGAGCAAACGCATTTTGATTGTTGAAGATGAGAAAAACCTTGCTCGTTTTGTCTCTCTTGAACTTCAACACGAAGGATA
CGACGTTGTGACAGCAGACAACGGACGCGAAGGACTTGAAATGGCACTCGAGAAAGATTTTGATCTTATTCTCTTGGACC
TTATGTTGCCTGAGATGGACGGTTTTGAAGTAACACGTCGTCTCCAACAAGAAAAAGATACTTATATTATGATGATGACA
GCTCGCGATTCAATCATGGACATTGTTGCTGGTTTGGACCGCGGTGCTGATGACTATATTGTAAAACCATTTGCGATTGA
AGAATTGTTGGCACGTATCCGTGCAAACTTCCGTCGCCAAGATATCGAATCTGCTAAGAATGCACCAGCAAAAGCATCAA
CTTATCGTGATTTGAAATTGGATGTTCAAAACCGTACAGTTGTTCGTGGTGATGAAGCAATTCCATTGACAAAACGTGAG
TTTGATTTGTTGAACACACTTTTGAGCAATATGAACCAAGTGATGACCCGTGAGGAACTCTTGCTTCAAGTTTGGAAATA
TGATGACGCCATCGAAACAAACGTGGTAGATGTTTATATTCGTTATTTGCGTGGAAAAATCGACGTTCCAGGTAAGGAAT
CATATATTCAAACAGTACGAGGAATGGGTTACGTTATCCGTGAAAAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

99.127

100

0.991
  covR Lactococcus lactis subsp. lactis strain DGCC12653

68.421

99.563

0.681
  vicR Streptococcus mutans UA159

46.352

100

0.472
  micA Streptococcus pneumoniae Cp1015

44.156

100

0.445

Multiple sequence alignment