Detailed information    

insolico Bioinformatically predicted

Overview

Name   covS   Type   Regulator
Locus tag   NSQ79_RS01560 Genome accession   NZ_CP150200
Coordinates   289538..291067 (+) Length   509 a.a.
NCBI ID   WP_002886591.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W7-1342     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 284538..296067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ79_RS01530 (NSQ79_01530) - 284786..284914 (+) 129 Protein_248 energy-coupling factor transporter transmembrane protein EcfT -
  NSQ79_RS01535 (NSQ79_01535) - 285004..285675 (-) 672 WP_073686620.1 TrkA family potassium uptake protein -
  NSQ79_RS01540 (NSQ79_01540) - 285715..287079 (-) 1365 WP_111686475.1 potassium transporter TrkG -
  NSQ79_RS01545 (NSQ79_01545) rsmG 287148..287861 (-) 714 WP_013990060.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NSQ79_RS01550 (NSQ79_01550) - 288160..288696 (+) 537 WP_070579518.1 YceD family protein -
  NSQ79_RS01555 (NSQ79_01555) covR 288852..289541 (+) 690 WP_339313746.1 response regulator transcription factor Regulator
  NSQ79_RS01560 (NSQ79_01560) covS 289538..291067 (+) 1530 WP_002886591.1 HAMP domain-containing histidine kinase Regulator
  NSQ79_RS01565 (NSQ79_01565) nrdR 291189..291668 (+) 480 WP_002886592.1 transcriptional regulator NrdR -
  NSQ79_RS01570 (NSQ79_01570) - 291665..292840 (+) 1176 WP_013990063.1 DnaD domain protein -
  NSQ79_RS01575 (NSQ79_01575) dnaI 292844..293746 (+) 903 WP_013990064.1 primosomal protein DnaI -
  NSQ79_RS01580 (NSQ79_01580) der 293851..295161 (+) 1311 WP_002886596.1 ribosome biogenesis GTPase Der -
  NSQ79_RS01585 (NSQ79_01585) - 295225..295854 (+) 630 WP_073686617.1 ribonuclease P -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 58137.57 Da        Isoelectric Point: 5.3949

>NTDB_id=966080 NSQ79_RS01560 WP_002886591.1 289538..291067(+) (covS) [Streptococcus sp. FSL W7-1342]
MSKLQDKLFGKVTIRKKLTMTTAVVFFLVLSLFTLVVIFSANTLLLQRERQNVNTTIAKVVTYIEKDWDSDEELSPEPLL
AALYSPKNIYASIINGVLSEKHSLDGQVAISNKLYSNQSVFVYDKKGTFIFTSEENTDSPPGMSEVNKLKSVSYKGKRGF
LLQVPIYGKDKKTIVGYAQIFHDLEFYYALKERLVFLLIFLEVGMTVLVIAATVVVLTSILRPMRQLHETMGVITDSPSD
LELRSKIESHDEIGDLAVNFNRMMDKIQENNQMQMRFLSDVSHELRTPIAVIKGHMDLLQRWGKNDPEILEESLEAASHE
ANRMTIMINDMLDSIRVKGSFENHRNDTCDLNSSIRTVIGNFRVLHEDYQFYLNDFESSERLAQIYSQHFEQAITILIDN
AVKYSPVNKEIQVTIKALEDEMLVQVQDNGEGISKEDINHIFERFYRSDKARNRTTTQSGVGIGLSILYQIVEAYRCRID
VSSELGVGTRFDLYIPFADRETTTPQLEL

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=966080 NSQ79_RS01560 WP_002886591.1 289538..291067(+) (covS) [Streptococcus sp. FSL W7-1342]
ATGAGTAAATTACAAGATAAATTATTTGGTAAAGTAACCATTAGAAAAAAGTTGACCATGACAACTGCTGTGGTCTTCTT
TCTTGTATTGTCGTTGTTCACTCTGGTTGTTATTTTTTCAGCTAATACGCTTCTTTTGCAACGTGAACGTCAAAATGTAA
ACACTACAATCGCAAAAGTTGTTACTTACATCGAAAAGGATTGGGATTCGGATGAAGAATTAAGTCCAGAACCGCTCTTA
GCGGCTCTTTATTCGCCTAAAAATATCTATGCATCAATTATTAATGGCGTACTTTCTGAAAAGCACTCTTTGGATGGTCA
AGTTGCAATTTCTAATAAATTATATTCAAATCAGTCAGTTTTTGTGTATGACAAAAAAGGAACCTTTATCTTTACTTCTG
AGGAGAATACAGATTCGCCTCCCGGTATGTCCGAGGTAAACAAACTGAAGTCAGTATCCTATAAAGGAAAGCGTGGTTTC
TTACTACAAGTTCCAATTTACGGTAAGGATAAAAAGACCATCGTTGGCTATGCCCAGATTTTCCATGATTTGGAATTCTA
CTATGCTCTTAAAGAGCGTTTGGTTTTCTTGTTGATTTTCCTAGAAGTGGGGATGACTGTCCTAGTTATCGCAGCAACTG
TAGTTGTCTTGACATCTATTCTTCGTCCGATGAGACAGTTGCACGAAACGATGGGAGTTATTACCGATTCGCCAAGTGAT
TTGGAACTTCGTTCTAAGATTGAAAGTCACGATGAAATTGGTGATTTGGCGGTTAACTTTAACCGCATGATGGATAAAAT
TCAAGAAAATAATCAGATGCAGATGCGTTTCTTGAGTGACGTCAGTCATGAATTGCGTACGCCGATTGCGGTTATCAAGG
GGCATATGGACCTCTTGCAACGTTGGGGTAAAAATGACCCTGAGATTCTTGAAGAAAGTCTTGAGGCTGCAAGTCACGAG
GCCAACCGTATGACGATTATGATTAATGATATGTTGGATTCTATCCGTGTCAAAGGATCATTTGAAAATCATAGAAACGA
TACTTGTGATTTGAATTCTTCAATCCGTACGGTTATTGGGAACTTCCGTGTCTTGCATGAAGATTATCAATTTTATCTCA
ATGATTTCGAAAGTTCAGAGCGTCTAGCACAGATTTATAGTCAGCACTTTGAACAGGCGATCACCATTTTGATTGATAAT
GCGGTCAAGTATTCGCCTGTCAATAAGGAAATACAGGTTACTATTAAAGCATTGGAAGATGAAATGTTGGTACAAGTGCA
AGATAACGGTGAGGGAATTTCAAAAGAAGATATCAATCATATTTTTGAACGTTTCTATCGTTCAGATAAGGCACGTAACC
GTACAACAACTCAATCTGGTGTTGGTATTGGTTTGTCAATCCTTTATCAAATTGTGGAAGCTTATCGCTGCCGAATTGAT
GTTAGTTCTGAACTTGGTGTTGGAACACGTTTCGACCTTTACATTCCATTTGCAGATCGAGAAACGACGACACCTCAACT
TGAGCTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(274-333)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(388-497)

ArlS sensor domain (ArlS_N)

(43-191)

HAMP domain (HAMP)

(217-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covS Streptococcus salivarius strain HSISS4

98.625

100

0.986

Multiple sequence alignment