Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NST29_RS18055 Genome accession   NZ_CP150194
Coordinates   3615869..3616363 (-) Length   164 a.a.
NCBI ID   WP_033017875.1    Uniprot ID   -
Organism   Geobacillus sp. FSL W8-0026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3610869..3621363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST29_RS18035 (NST29_18035) rplI 3611833..3612282 (-) 450 WP_033017878.1 50S ribosomal protein L9 -
  NST29_RS18040 (NST29_18040) - 3612279..3614252 (-) 1974 WP_033017877.1 DHH family phosphoesterase -
  NST29_RS18045 (NST29_18045) - 3614300..3615226 (-) 927 WP_033017876.1 YybS family protein -
  NST29_RS18050 (NST29_18050) rpsR 3615295..3615531 (-) 237 WP_008880812.1 30S ribosomal protein S18 -
  NST29_RS18055 (NST29_18055) ssbA 3615869..3616363 (-) 495 WP_033017875.1 single-stranded DNA-binding protein Machinery gene
  NST29_RS18060 (NST29_18060) rpsF 3616393..3616680 (-) 288 WP_033017874.1 30S ribosomal protein S6 -
  NST29_RS18065 (NST29_18065) ychF 3617146..3618246 (-) 1101 WP_033017873.1 redox-regulated ATPase YchF -
  NST29_RS18070 (NST29_18070) - 3618274..3618471 (-) 198 WP_033017872.1 DUF951 domain-containing protein -
  NST29_RS18075 (NST29_18075) - 3618490..3619389 (-) 900 WP_108209729.1 mechanosensitive ion channel family protein -
  NST29_RS18080 (NST29_18080) yyaC 3619584..3620207 (+) 624 WP_033017870.1 spore protease YyaC -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18370.31 Da        Isoelectric Point: 4.5972

>NTDB_id=965806 NST29_RS18055 WP_033017875.1 3615869..3616363(-) (ssbA) [Geobacillus sp. FSL W8-0026]
MINRVILVGRLTKDPELRYTPSGVAVATFTLAVNRPFTNQQGERETDFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADSVQFLEPKGVSEQRGAAAGGYYGDPFPFGQDQNHRYPNDKQAGRIDEDPFADDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=965806 NST29_RS18055 WP_033017875.1 3615869..3616363(-) (ssbA) [Geobacillus sp. FSL W8-0026]
ATGATTAACCGCGTCATTTTAGTCGGCAGGTTAACGAAAGATCCGGAGTTGCGCTACACTCCAAGCGGAGTGGCTGTTGC
CACGTTCACGCTTGCCGTCAACCGGCCGTTTACAAACCAGCAAGGCGAACGGGAAACGGATTTTATTCAATGCGTCGTTT
GGCGCCGCCAAGCGGAAAATGTGGCGAATTTCCTCAAAAAGGGGAGTTTGGCTGGAGTCGATGGCCGGCTGCAGACCCGC
AGCTACGAAAATCAAGAAGGCCGGCGCGTCTATGTCACGGAAGTGGTGGCTGACAGCGTCCAATTTTTAGAGCCCAAAGG
TGTGAGCGAGCAGCGAGGGGCAGCAGCAGGCGGCTACTATGGGGATCCATTCCCATTCGGACAAGATCAGAACCACCGAT
ATCCGAACGACAAACAGGCGGGCCGCATCGATGAAGATCCTTTCGCCGATGACGGTCAGCCGATCGATATTTCCGATGAC
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.241

100

0.713
  ssb Latilactobacillus sakei subsp. sakei 23K

58.824

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

64.634

0.415
  ssb Vibrio cholerae strain A1552

35.028

100

0.378
  ssb Glaesserella parasuis strain SC1401

32.973

100

0.372

Multiple sequence alignment