Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSQ18_RS07140 Genome accession   NZ_CP150191
Coordinates   1469915..1470436 (+) Length   173 a.a.
NCBI ID   WP_016838915.1    Uniprot ID   -
Organism   Ureibacillus sp. FSL K6-0786     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1464915..1475436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ18_RS07105 (NSQ18_07105) - 1465052..1465759 (+) 708 WP_016838922.1 DUF554 domain-containing protein -
  NSQ18_RS07110 (NSQ18_07110) yyaC 1465676..1466305 (-) 630 WP_016838921.1 spore protease YyaC -
  NSQ18_RS07115 (NSQ18_07115) - 1466405..1467325 (+) 921 WP_016838920.1 mechanosensitive ion channel family protein -
  NSQ18_RS07120 (NSQ18_07120) - 1467325..1467522 (+) 198 WP_016838919.1 DUF951 domain-containing protein -
  NSQ18_RS07125 (NSQ18_07125) ychF 1467680..1468780 (+) 1101 WP_016838918.1 redox-regulated ATPase YchF -
  NSQ18_RS07130 (NSQ18_07130) - 1468855..1469400 (-) 546 WP_016838917.1 DUF3267 domain-containing protein -
  NSQ18_RS07135 (NSQ18_07135) rpsF 1469589..1469876 (+) 288 WP_016838916.1 30S ribosomal protein S6 -
  NSQ18_RS07140 (NSQ18_07140) ssbA 1469915..1470436 (+) 522 WP_016838915.1 single-stranded DNA-binding protein Machinery gene
  NSQ18_RS07145 (NSQ18_07145) rpsR 1470482..1470718 (+) 237 WP_016838914.1 30S ribosomal protein S18 -
  NSQ18_RS07150 (NSQ18_07150) - 1471241..1472182 (+) 942 WP_016838913.1 YybS family protein -
  NSQ18_RS07155 (NSQ18_07155) - 1472195..1474168 (+) 1974 WP_016838912.1 DHH family phosphoesterase -
  NSQ18_RS07160 (NSQ18_07160) rplI 1474165..1474611 (+) 447 WP_016838911.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19163.27 Da        Isoelectric Point: 4.7719

>NTDB_id=965662 NSQ18_RS07140 WP_016838915.1 1469915..1470436(+) (ssbA) [Ureibacillus sp. FSL K6-0786]
MINRVVLVGRLTKDPELRYTPNGVPVTRFTVAVNRTFTNQQGEREADFISCVAWRKQAENLANYMRKGSLVGIDGRIQTS
SFEGQDGKRVYMTEVVADSVQFLEPRSAQGQQPYGGQPSYGASQPPYGGTQDPFGVPFPSQPPQNQPNYTRVDEDPFASS
KGPIEVSEDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=965662 NSQ18_RS07140 WP_016838915.1 1469915..1470436(+) (ssbA) [Ureibacillus sp. FSL K6-0786]
TTGATCAATCGTGTCGTATTAGTAGGTAGGCTAACAAAAGACCCTGAACTACGATACACGCCAAATGGAGTACCGGTAAC
TCGATTTACAGTTGCTGTAAATCGAACGTTTACGAACCAACAAGGTGAAAGAGAAGCGGATTTCATTAGCTGTGTAGCAT
GGAGAAAACAAGCTGAAAACCTCGCAAATTACATGAGAAAAGGAAGTCTCGTCGGTATTGATGGACGCATCCAAACTAGT
AGTTTCGAGGGTCAAGATGGCAAACGTGTTTACATGACAGAAGTCGTAGCAGATTCCGTGCAATTTTTAGAACCAAGAAG
TGCACAGGGTCAACAGCCATATGGGGGACAACCTTCGTACGGTGCAAGTCAACCTCCATACGGTGGCACGCAAGATCCAT
TTGGTGTACCATTCCCAAGTCAACCTCCTCAAAATCAGCCGAATTATACACGTGTAGATGAAGACCCATTTGCATCAAGC
AAAGGTCCAATTGAAGTTTCGGAAGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.945

100

0.578
  ssb Latilactobacillus sakei subsp. sakei 23K

52.023

100

0.52
  ssb Neisseria gonorrhoeae MS11

36.158

100

0.37
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.272

0.364
  ssb Neisseria meningitidis MC58

35.593

100

0.364

Multiple sequence alignment