Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ACICHK_RS39275 Genome accession   NZ_CP174283
Coordinates   8938007..8939203 (+) Length   398 a.a.
NCBI ID   WP_406840733.1    Uniprot ID   -
Organism   Streptomyces sp. AHU1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8933007..8944203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICHK_RS39250 (ACICHK_39250) - 8933721..8934695 (+) 975 WP_406840728.1 ATP-binding protein -
  ACICHK_RS39255 (ACICHK_39255) - 8934692..8935207 (+) 516 WP_406840729.1 hypothetical protein -
  ACICHK_RS39260 (ACICHK_39260) - 8935204..8935995 (+) 792 WP_406840730.1 hypothetical protein -
  ACICHK_RS39265 (ACICHK_39265) - 8936210..8936713 (+) 504 WP_406840731.1 single-stranded DNA-binding protein -
  ACICHK_RS39270 (ACICHK_39270) recA 8936775..8937944 (+) 1170 WP_406840732.1 recombinase RecA Machinery gene
  ACICHK_RS39275 (ACICHK_39275) ruvB 8938007..8939203 (+) 1197 WP_406840733.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACICHK_RS39280 (ACICHK_39280) - 8940191..8940760 (+) 570 WP_406840734.1 FAD/NAD(P)-binding protein -
  ACICHK_RS39285 (ACICHK_39285) - 8941723..8942061 (+) 339 WP_406840735.1 MerR family transcriptional regulator -
  ACICHK_RS39290 (ACICHK_39290) - 8942275..8942634 (-) 360 WP_406840736.1 hypothetical protein -
  ACICHK_RS39295 (ACICHK_39295) - 8943033..8943362 (-) 330 WP_406840737.1 UBP-type zinc finger domain-containing protein -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 42078.02 Da        Isoelectric Point: 6.4258

>NTDB_id=964948 ACICHK_RS39275 WP_406840733.1 8938007..8939203(+) (ruvB) [Streptomyces sp. AHU1]
MFPGAATPRDETPTPGRTAVGRPTAAEPVHRPAAAAADGEDRVTEAALRPKDLDAFIGQARVREQLDLVLRAARQRSVTA
DHVLLSGAPGLGKTTLAMIIAAEMGAPLRITSGPAIQHPGDLAAVLTSLTGGEVLFLDEIHRMSRPAEEMLYLAMEDFRV
DIVVGTGLDATAMSLELPPFTLVGATVRAGLLLPPLRDRFGFTAHMEFYDPAELERVINRSARLLEVEVEPAGAAEIAGR
SRGTPRIANRLLRRVRDYAEVTADGAVTRQIASAALGVYEVDGRGLDRLDRAVLHALLKLFGGGPVGLSTLAVAVGEERE
TVEEVAEPFLVREGLLARTPRGRVAMPAAWAHFGLVPPPGPSRAAPPGHQNGNSGQDDPPGGRTGPTTSPAAPRHRPP

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=964948 ACICHK_RS39275 WP_406840733.1 8938007..8939203(+) (ruvB) [Streptomyces sp. AHU1]
ATGTTCCCCGGCGCCGCCACGCCTCGGGACGAGACGCCGACCCCGGGCAGGACCGCCGTCGGCCGGCCCACTGCGGCGGA
GCCTGTCCACCGGCCGGCCGCGGCCGCCGCCGACGGCGAGGACCGGGTCACCGAGGCGGCGTTGCGCCCCAAGGACCTGG
ACGCCTTCATCGGCCAAGCACGGGTCCGCGAGCAGCTCGACCTCGTCCTCAGGGCCGCGCGGCAGCGGAGCGTCACCGCC
GACCACGTGCTGCTCTCCGGCGCCCCGGGGCTCGGCAAGACCACCCTGGCGATGATCATCGCCGCGGAGATGGGAGCCCC
GCTGCGCATCACCTCCGGCCCCGCCATCCAGCACCCCGGGGACCTGGCGGCGGTCCTGACCTCGCTCACCGGGGGTGAGG
TCCTCTTCCTCGACGAGATCCACCGGATGTCCCGGCCCGCCGAGGAGATGCTCTACCTGGCGATGGAGGACTTCCGCGTC
GACATCGTCGTCGGCACCGGCCTCGACGCGACCGCCATGTCCCTCGAGCTGCCGCCGTTCACCCTCGTCGGCGCCACCGT
CCGGGCCGGCCTGCTGCTCCCGCCGCTGCGCGACCGCTTCGGCTTCACCGCCCACATGGAGTTCTACGACCCGGCCGAAC
TGGAGCGCGTCATCAACCGCTCCGCCCGGCTGCTGGAGGTGGAGGTCGAGCCCGCGGGCGCCGCCGAGATCGCCGGCCGC
TCCCGCGGCACGCCCCGCATCGCCAACCGGCTGCTGCGCCGGGTGCGGGACTACGCCGAGGTCACCGCGGACGGAGCGGT
CACCCGCCAGATCGCGTCCGCGGCCCTGGGGGTCTACGAGGTCGACGGTCGTGGCCTGGACCGCTTGGACCGGGCCGTGC
TGCACGCCCTGCTGAAGCTGTTCGGTGGCGGACCGGTCGGTCTGTCCACCCTCGCGGTCGCCGTGGGGGAGGAGCGGGAG
ACGGTGGAGGAGGTCGCCGAGCCGTTCCTGGTCCGGGAGGGGCTGCTGGCCCGGACGCCCCGGGGGCGGGTCGCGATGCC
CGCCGCCTGGGCCCACTTCGGGCTCGTACCGCCTCCCGGGCCGTCCCGGGCCGCGCCCCCGGGACACCAGAACGGCAATT
CCGGACAGGACGACCCACCCGGAGGCCGCACCGGACCGACCACCTCCCCGGCCGCTCCCCGGCACCGGCCCCCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(284-353)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(48-206)

RuvB AAA lid domain (AAA_lid_4)

(209-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.659

82.412

0.442
  ruvB Synechocystis sp. PCC 6803

52.548

78.894

0.415
  ruvB Streptococcus pneumoniae TIGR4

50.633

79.397

0.402
  ruvB Streptococcus pneumoniae R6

50.633

79.397

0.402
  ruvB Streptococcus pneumoniae D39

50.633

79.397

0.402
  ruvB Helicobacter pylori 26695

48.515

76.131

0.369