Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ACICHK_RS29375 Genome accession   NZ_CP174283
Coordinates   6601822..6602508 (+) Length   228 a.a.
NCBI ID   WP_406839202.1    Uniprot ID   -
Organism   Streptomyces sp. AHU1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6596822..6607508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICHK_RS29360 (ACICHK_29360) - 6597481..6599604 (+) 2124 WP_151468748.1 type IIA DNA topoisomerase subunit B -
  ACICHK_RS29365 (ACICHK_29365) - 6600150..6600677 (+) 528 WP_406839200.1 DUF1453 domain-containing protein -
  ACICHK_RS29370 (ACICHK_29370) - 6600674..6601825 (+) 1152 WP_406839201.1 sensor histidine kinase -
  ACICHK_RS29375 (ACICHK_29375) vraR 6601822..6602508 (+) 687 WP_406839202.1 response regulator Regulator
  ACICHK_RS29380 (ACICHK_29380) - 6602614..6603102 (+) 489 WP_151468744.1 DUF485 domain-containing protein -
  ACICHK_RS29385 (ACICHK_29385) - 6603099..6604691 (+) 1593 WP_406839203.1 cation acetate symporter -
  ACICHK_RS29390 (ACICHK_29390) - 6604767..6605459 (-) 693 WP_406839204.1 response regulator -
  ACICHK_RS29395 (ACICHK_29395) - 6605623..6606438 (+) 816 WP_406839205.1 ABC transporter ATP-binding protein -
  ACICHK_RS29400 (ACICHK_29400) - 6606428..6607291 (+) 864 WP_406839206.1 ABC transporter permease -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24145.58 Da        Isoelectric Point: 5.0097

>NTDB_id=964934 ACICHK_RS29375 WP_406839202.1 6601822..6602508(+) (vraR) [Streptomyces sp. AHU1]
MTERAEGRQPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGAEAVELVAELAPDVVLMDLRMPRCDGVEATRRIRA
EHPGTQVVVLTTFADDESLFPALRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSVQRRLLERLSDPEPAPGPPPEAP
DGLTSRETEVLLLIAEGLSNHEIARKLHVSTATVKTHINNLFAKAGLKDRAQAVRYAYGKGLVRPPAG

Nucleotide


Download         Length: 687 bp        

>NTDB_id=964934 ACICHK_RS29375 WP_406839202.1 6601822..6602508(+) (vraR) [Streptomyces sp. AHU1]
ATGACCGAGCGGGCGGAGGGCAGGCAGCCGGCGCGGGTCGTGGTCGCGGACGATCAGACGGTCGTGCGCGAAGGCATCGT
GATGCTGCTGGGGCTGTTGCCCGGGATCGAGGTCGTCGGAGCGGCCGGCGACGGGGCCGAGGCGGTGGAGCTGGTGGCCG
AACTCGCCCCCGACGTCGTGCTGATGGATCTGCGCATGCCCCGCTGCGACGGGGTCGAGGCGACCCGGCGCATCCGTGCA
GAGCATCCCGGGACCCAGGTCGTCGTGCTCACGACGTTCGCGGACGACGAGTCGTTGTTCCCCGCGCTCCGTGCCGGGGC
CCGCGGCTATCTGACCAAGGACGCGGGAGGAGACGAGATCGTGCGGGCCGTGGAAAGCGTGCTCTCCGGGGACGCGGGGC
TCTCGCCGAGCGTCCAGCGACGGCTGCTGGAGCGGCTGTCGGACCCGGAACCGGCGCCCGGCCCGCCTCCGGAGGCTCCG
GACGGGCTCACCTCGCGCGAGACGGAGGTTCTCCTGCTGATCGCCGAGGGCCTCAGCAACCATGAGATCGCCCGCAAGCT
GCATGTGTCCACGGCCACGGTGAAGACCCACATCAACAATCTCTTCGCCAAGGCTGGCCTCAAGGACCGTGCCCAAGCGG
TCCGTTACGCCTATGGGAAAGGTCTCGTACGGCCGCCCGCGGGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-217)

Response regulator receiver domain (Response_reg)

(13-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.437

93.421

0.368

Multiple sequence alignment