Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   NYE79_RS10000 Genome accession   NZ_CP150168
Coordinates   2047422..2048180 (+) Length   252 a.a.
NCBI ID   WP_216728672.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2042422..2053180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS09970 (NYE79_09970) comE 2043007..2043759 (-) 753 WP_000866079.1 competence system response regulator transcription factor ComE Regulator
  NYE79_RS09975 (NYE79_09975) comD 2043756..2045075 (-) 1320 WP_000362886.1 competence system sensor histidine kinase ComD Regulator
  NYE79_RS09980 (NYE79_09980) comC/comC2 2045096..2045221 (-) 126 WP_000799678.1 competence-stimulating peptide ComC Regulator
  NYE79_RS09990 (NYE79_09990) rlmH 2045503..2045982 (-) 480 WP_000694219.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NYE79_RS09995 (NYE79_09995) htrA 2046168..2047364 (+) 1197 WP_084877132.1 S1C family serine protease Regulator
  NYE79_RS10000 (NYE79_10000) spo0J 2047422..2048180 (+) 759 WP_216728672.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29039.51 Da        Isoelectric Point: 8.2829

>NTDB_id=964648 NYE79_RS10000 WP_216728672.1 2047422..2048180(+) (spo0J) [Streptococcus sp. FSL W8-0197]
MEKFEMISISEIQKNPYQPRKEFDADKLKELAQSIKENGLIQPIIVRQSPVIGYEILAGERRYRASLLAGLTSIPAVVKH
LSDQEMMIQSIIENLQRENLNPVEEARAYESLVEKGFTHTEIADKMGKSRPYITNFIRLLSLPEYILTEVENGKISQAHA
RSLVGLDKEQQDYFFQLIKNEDISVRKLEALLTEKKHKKQKKSDSFIKDEEDKLKKLLGLSVEIKLSKKDTGKIIISFSS
QEEYDRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=964648 NYE79_RS10000 WP_216728672.1 2047422..2048180(+) (spo0J) [Streptococcus sp. FSL W8-0197]
ATGGAAAAATTTGAAATGATTTCTATCTCTGAAATACAAAAGAATCCTTACCAACCTCGGAAAGAATTTGATGCAGATAA
ACTAAAGGAATTAGCTCAGTCAATCAAAGAAAATGGGCTCATCCAACCAATCATCGTTCGTCAATCTCCTGTAATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGATATCGGGCTTCTCTCTTGGCTGGTCTGACCTCTATCCCAGCCGTTGTAAAGCAC
CTCTCAGATCAGGAAATGATGATTCAGTCTATCATTGAGAATTTGCAGAGAGAAAATTTAAATCCTGTTGAAGAAGCACG
CGCCTACGAATCTTTAGTAGAAAAAGGATTTACTCACACTGAGATAGCGGATAAAATGGGGAAATCTCGTCCTTATATCA
CTAATTTTATTCGTTTGCTTTCCCTACCAGAATATATCTTAACTGAAGTAGAAAATGGAAAAATTTCTCAAGCGCATGCA
CGTTCACTAGTTGGTTTGGACAAAGAGCAGCAAGACTATTTCTTTCAACTAATTAAAAATGAAGACATCTCTGTGAGAAA
GCTAGAAGCACTTCTTACAGAGAAAAAACACAAGAAGCAAAAAAAAAGTGATTCTTTCATCAAAGACGAAGAAGATAAAT
TAAAAAAACTACTCGGTTTAAGTGTAGAAATTAAACTTTCAAAAAAAGATACTGGAAAGATTATTATCTCCTTTTCAAGT
CAAGAAGAATACGATAGAATTATTAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(145-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508

Multiple sequence alignment