Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NYE79_RS06070 Genome accession   NZ_CP150168
Coordinates   1200504..1201460 (-) Length   318 a.a.
NCBI ID   WP_033629881.1    Uniprot ID   A0AAW7W681
Organism   Streptococcus sp. FSL W8-0197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1195504..1206460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS06050 (NYE79_06050) - 1195548..1196771 (-) 1224 WP_339293613.1 FtsW/RodA/SpoVE family cell cycle protein -
  NYE79_RS06055 (NYE79_06055) prsA 1196959..1197900 (-) 942 WP_000728080.1 peptidylprolyl isomerase PrsA -
  NYE79_RS06060 (NYE79_06060) - 1197968..1198681 (-) 714 WP_070800365.1 O-methyltransferase -
  NYE79_RS06065 (NYE79_06065) pepF 1198683..1200485 (-) 1803 WP_339293614.1 oligoendopeptidase F Regulator
  NYE79_RS06070 (NYE79_06070) coiA 1200504..1201460 (-) 957 WP_033629881.1 competence protein CoiA family protein Machinery gene
  NYE79_RS06075 (NYE79_06075) - 1201537..1202685 (-) 1149 WP_000202644.1 DUF1887 family protein -
  NYE79_RS06080 (NYE79_06080) tehB 1202863..1203723 (-) 861 WP_000413068.1 SAM-dependent methyltransferase TehB -
  NYE79_RS06085 (NYE79_06085) smpB 1203738..1204205 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37871.38 Da        Isoelectric Point: 9.5727

>NTDB_id=964613 NYE79_RS06070 WP_033629881.1 1200504..1201460(-) (coiA) [Streptococcus sp. FSL W8-0197]
MFVARDAKGNFVNALENDVTKQAYTCPACGGGLRLRQGQSIRTHFAHERLRDCMAIFENESPEHLGNKEGLYHWAKKDNQ
VALEYSLPEIQQIADVLVNEKLALEVQCSPLSQKLLGDRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
FVWELDLKRKILRLKYLLHQDLRGKLHFQVKEFPYGKGNLLEILRFPYQKQKLPRFAVVQDSTICHYIRQQLYYQNPYWM
KKQEEAYQRGDNLLNRQLDDWYPQVRPIESGDFLQIETDLASYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=964613 NYE79_RS06070 WP_033629881.1 1200504..1201460(-) (coiA) [Streptococcus sp. FSL W8-0197]
ATGTTTGTAGCCAGAGATGCCAAGGGGAATTTTGTGAATGCCCTCGAAAATGATGTGACCAAGCAAGCTTATACTTGTCC
AGCCTGTGGAGGCGGACTACGATTACGCCAAGGACAGAGCATTCGAACGCACTTTGCCCATGAAAGGTTAAGGGATTGTA
TGGCCATTTTTGAGAATGAAAGTCCAGAACACTTGGGCAACAAAGAGGGCCTTTATCACTGGGCCAAGAAAGACAATCAG
GTCGCCTTAGAATATAGTCTGCCCGAGATTCAGCAGATAGCAGATGTTCTCGTCAATGAAAAATTAGCACTGGAGGTTCA
GTGCAGCCCCTTGTCTCAAAAGCTTTTAGGCGATAGAAGCCAAGGATACCGCAGCCAGGGCTATCAGGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAGGAGCGATTAACACAACTGCAAAGGGGCTTTCTCTATTTTAGTCAAAATATGGGTTTC
TTTGTTTGGGAACTGGATCTCAAAAGGAAAATTTTGAGACTCAAATATCTTCTGCATCAGGATCTACGTGGCAAGCTTCA
TTTTCAGGTCAAAGAATTTCCCTATGGAAAAGGAAATCTCTTGGAAATTCTACGATTTCCTTATCAGAAACAAAAACTGC
CTCGTTTTGCAGTTGTGCAAGATTCCACTATCTGTCACTACATTCGCCAACAGTTGTACTACCAAAACCCTTACTGGATG
AAAAAACAGGAGGAGGCTTATCAACGAGGAGACAATCTATTAAACCGTCAACTGGATGACTGGTATCCCCAGGTCAGACC
GATAGAGTCAGGAGATTTTTTGCAGATTGAAACGGATTTGGCTAGCTATTATAGAAATTTTCAGGCCTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-246)

Probable zinc-ribbon (Zn_ribbon_11)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

70.126

100

0.701
  coiA Streptococcus pneumoniae Rx1

69.811

100

0.698
  coiA Streptococcus pneumoniae D39

69.811

100

0.698
  coiA Streptococcus pneumoniae R6

69.811

100

0.698
  coiA Streptococcus pneumoniae TIGR4

69.497

100

0.695
  coiA Lactococcus lactis subsp. cremoris KW2

43.385

100

0.443

Multiple sequence alignment