Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NYE79_RS06065 Genome accession   NZ_CP150168
Coordinates   1198683..1200485 (-) Length   600 a.a.
NCBI ID   WP_339293614.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1193683..1205485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS06050 (NYE79_06050) - 1195548..1196771 (-) 1224 WP_339293613.1 FtsW/RodA/SpoVE family cell cycle protein -
  NYE79_RS06055 (NYE79_06055) prsA 1196959..1197900 (-) 942 WP_000728080.1 peptidylprolyl isomerase PrsA -
  NYE79_RS06060 (NYE79_06060) - 1197968..1198681 (-) 714 WP_070800365.1 O-methyltransferase -
  NYE79_RS06065 (NYE79_06065) pepF 1198683..1200485 (-) 1803 WP_339293614.1 oligoendopeptidase F Regulator
  NYE79_RS06070 (NYE79_06070) coiA 1200504..1201460 (-) 957 WP_033629881.1 competence protein CoiA family protein Machinery gene
  NYE79_RS06075 (NYE79_06075) - 1201537..1202685 (-) 1149 WP_000202644.1 DUF1887 family protein -
  NYE79_RS06080 (NYE79_06080) tehB 1202863..1203723 (-) 861 WP_000413068.1 SAM-dependent methyltransferase TehB -
  NYE79_RS06085 (NYE79_06085) smpB 1203738..1204205 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69799.67 Da        Isoelectric Point: 4.5731

>NTDB_id=964612 NYE79_RS06065 WP_339293614.1 1198683..1200485(-) (pepF) [Streptococcus sp. FSL W8-0197]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTAAQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTRETKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGSASETFAILDNADISFPYVLDDEGNEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVDYSFTYEEALK
KAEEALAVLGDDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=964612 NYE79_RS06065 WP_339293614.1 1198683..1200485(-) (pepF) [Streptococcus sp. FSL W8-0197]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCGACAATCTACCCAACAGACCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCAGCCCAGTATGAGGGACATCTCTTGGACAGCGCAGACAGTT
TGCTTGAGATCACAGAATTCTCACTCGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTATGCGCATATGAAAAATGAC
CAGGACACGCGTGAGACCAAGTATCAAGAGTACTATGCCAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGCGAAGAGCAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAGCACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTGCTTGCTGGAGCA
GGAGAAATCTTTGGTTCTGCTAGTGAAACCTTCGCTATTTTGGACAATGCGGATATTAGCTTCCCATACGTGCTTGATGA
CGAAGGCAATGAAGTGCAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGTCGTGGTG
CCTATGAAGCCCTTTATGCGACTTACGAGCAATTCCAACATACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTGCAA
AACTACCGAGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTCGCAGCAAACTTTGTTCCAGAAAGTGTCTA
TGACAATCTAGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTAGAACTTCGTTCTAAAATCTTAGGTA
TTTCCGACCTCAAGATGTACGATGTCTACACACCACTTTCGTCAGTAGATTATAGCTTTACCTACGAAGAAGCCTTGAAA
AAGGCAGAAGAAGCTTTGGCAGTTTTAGGTGACGACTACTTGAGCCGTGTTAAACGTGCCTTCAGTGAGCGTTGGATTGA
TGTCTATGAAAACCAAGGCAAGCGTTCTGGTGCCTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTTCTCAACT
GGCAGGACAATCTAGACAATCTCTTTACCCTTGTCCATGAAACAGGTCACAGTATGCACTCAAGCTATACTCGTGAAACC
CAGCCTTATGTTTACGGGGATTACTCTATCTTCTTGGCGGAGATTGCCTCAACCACAAACGAAAATATCTTGACAGAGAA
ATTGTTGGAAGAAGTAGAAGACGATGCAACTCGCTTTGCTATTCTCAATAACTTCCTAGACGGTTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACACGCCATCCACCAAGCAGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTCAATAAGCTCTACGCTGACCTGAACCAAGAGTACTATGGACTCAGCAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCACGCATTCCACATTTCTACTATAACTACTATGTTTATCAATATTCAACTGGTTTTGCAGCTGCTTCAGCCTTAGCTG
AAAAGATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATCGACTACCTCAAGGCAGGTAAGTCAGACTATCCGCTC
AATGTTATGAGAAAAGCGGGAGTGGATATGGAGAAGGAAGACTATCTCAACGATGCCTTTGCAGTCTTTGAACGCCGCTT
GAACGAGTTTGAAGCCCTTGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.282

99.333

0.668

Multiple sequence alignment