Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   NYE79_RS04510 Genome accession   NZ_CP150168
Coordinates   894814..895662 (+) Length   282 a.a.
NCBI ID   WP_061586937.1    Uniprot ID   A0A1X1H5U6
Organism   Streptococcus sp. FSL W8-0197     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 889814..900662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS04495 (NYE79_04495) - 891335..892063 (+) 729 WP_084873214.1 metallophosphoesterase family protein -
  NYE79_RS04500 (NYE79_04500) lepA 892142..893965 (+) 1824 WP_339293822.1 translation elongation factor 4 -
  NYE79_RS04505 (NYE79_04505) - 894110..894733 (+) 624 WP_216728328.1 hypothetical protein -
  NYE79_RS04510 (NYE79_04510) dprA/cilB/dalA 894814..895662 (+) 849 WP_061586937.1 DNA-processing protein DprA Machinery gene
  NYE79_RS04515 (NYE79_04515) topA 895780..897867 (+) 2088 WP_216728330.1 type I DNA topoisomerase -
  NYE79_RS04520 (NYE79_04520) - 897974..898333 (+) 360 WP_001220359.1 YbaN family protein -
  NYE79_RS04525 (NYE79_04525) - 898427..899059 (+) 633 WP_216728331.1 copper homeostasis protein CutC -
  NYE79_RS04530 (NYE79_04530) - 899103..899759 (+) 657 WP_213952030.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31231.70 Da        Isoelectric Point: 5.2027

>NTDB_id=964607 NYE79_RS04510 WP_061586937.1 894814..895662(+) (dprA/cilB/dalA) [Streptococcus sp. FSL W8-0197]
MKITNYEIYKLRKAGLTNQQILTVLEYDETVDQELLLGDIAEISGCRNPAVFMERYFQIDDAQLEKEFQKFPSFSILDDC
YPWDLSEIYDAPALLFYKGNLDLLKFPKVAVVGSRSCSSQGAKSVQKVIQGLENELIVVSGLAKGIDTAAHMAALQNGGR
TIAVIGTGLDVFYPRANKRLQEHIGNHHLVLSEYGPGEEPLKFHFPARNRIIAGLCRGVIVAEARMRSGSLITCERAMEE
GRDVFAIPGNILDGHSDGCHHLIQEGAKLISSGQDVLAEFEF

Nucleotide


Download         Length: 849 bp        

>NTDB_id=964607 NYE79_RS04510 WP_061586937.1 894814..895662(+) (dprA/cilB/dalA) [Streptococcus sp. FSL W8-0197]
ATGAAGATCACAAACTATGAGATTTACAAATTGAGAAAAGCTGGGCTGACCAATCAACAAATTTTAACTGTTCTTGAGTA
CGACGAGACTGTAGATCAGGAGCTCTTGCTAGGTGATATTGCAGAAATTTCAGGTTGTCGTAATCCTGCTGTCTTTATGG
AACGCTATTTCCAGATAGATGATGCACAGTTGGAGAAGGAGTTTCAGAAATTTCCATCCTTCTCGATTCTTGATGACTGT
TATCCTTGGGATCTGAGTGAGATTTATGATGCTCCAGCGCTCTTGTTTTATAAAGGAAACCTAGACCTGTTGAAATTTCC
AAAGGTTGCTGTTGTAGGGAGTCGTTCATGTTCTAGTCAGGGAGCAAAATCGGTTCAGAAAGTCATTCAAGGTTTGGAAA
ACGAGTTAATCGTGGTCAGTGGTTTGGCCAAAGGGATTGATACGGCTGCCCATATGGCTGCACTCCAGAATGGAGGAAGA
ACAATTGCTGTCATTGGAACAGGATTGGATGTTTTCTATCCCCGCGCCAATAAACGTTTGCAGGAACACATTGGCAATCA
CCATTTGGTACTTAGCGAGTATGGACCTGGTGAAGAACCCTTGAAATTTCACTTTCCAGCTCGTAATCGCATCATTGCTG
GCCTTTGCCGTGGTGTGATCGTTGCAGAGGCAAGGATGCGTTCAGGGAGTCTTATTACCTGTGAACGAGCTATGGAGGAA
GGTCGCGATGTTTTTGCTATTCCAGGAAACATTTTAGATGGCCATTCAGATGGCTGTCACCACCTGATTCAAGAGGGAGC
AAAGCTGATTAGTAGCGGTCAAGATGTGTTAGCTGAGTTTGAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-271)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(3-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1H5U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

91.489

100

0.915
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

91.135

100

0.911
  dprA/cilB/dalA Streptococcus pneumoniae D39

91.135

100

0.911
  dprA/cilB/dalA Streptococcus pneumoniae R6

91.135

100

0.911
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

91.135

100

0.911
  dprA/cilB/dalA Streptococcus mitis SK321

90.426

100

0.904
  dprA Streptococcus mutans UA159

60.714

99.291

0.603
  dprA Lactococcus lactis subsp. cremoris KW2

54.643

99.291

0.543

Multiple sequence alignment