Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OO986_RS10390 Genome accession   NZ_AP026552
Coordinates   2239076..2239378 (-) Length   100 a.a.
NCBI ID   WP_013572179.1    Uniprot ID   A0AAN1PPQ8
Organism   Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2234076..2244378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO986_RS10365 (VV208B2_19150) - 2234619..2235833 (+) 1215 WP_011080966.1 pyridoxal phosphate-dependent aminotransferase -
  OO986_RS10370 (VV208B2_19160) yfbR 2235950..2236498 (+) 549 WP_231846899.1 5'-deoxynucleotidase -
  OO986_RS10375 (VV208B2_19170) - 2236504..2237835 (+) 1332 WP_044023917.1 anti-phage deoxyguanosine triphosphatase -
  OO986_RS10380 (VV208B2_19180) - 2237857..2238465 (-) 609 WP_039553150.1 tRNA-uridine aminocarboxypropyltransferase -
  OO986_RS10385 rrtA 2238445..2239029 (+) 585 WP_011078143.1 rhombosortase -
  OO986_RS10390 (VV208B2_19200) comEA 2239076..2239378 (-) 303 WP_013572179.1 helix-hairpin-helix domain-containing protein Machinery gene
  OO986_RS10395 (VV208B2_19210) ppiD 2239511..2241370 (-) 1860 WP_013572180.1 peptidylprolyl isomerase -
  OO986_RS10400 (VV208B2_19220) - 2241547..2241819 (-) 273 WP_013572181.1 HU family DNA-binding protein -
  OO986_RS10405 (VV208B2_19230) lon 2242013..2244364 (-) 2352 WP_011078147.1 endopeptidase La -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10900.72 Da        Isoelectric Point: 9.6573

>NTDB_id=96378 OO986_RS10390 WP_013572179.1 2239076..2239378(-) (comEA) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=96378 OO986_RS10390 WP_013572179.1 2239076..2239378(-) (comEA) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGAAACAGGTATTTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

59

100

0.59
  comEA Vibrio campbellii strain DS40M4

54

100

0.54
  comEA Vibrio cholerae C6706

52.041

98

0.51
  comEA Vibrio cholerae strain A1552

52.041

98

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

60

60

0.36

Multiple sequence alignment