Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | OW489_RS06060 | Genome accession | NZ_AP026446 |
| Coordinates | 1283578..1283841 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori strain CHC155 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1278578..1288841
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OW489_RS06035 (CHC155_11870) | groES | 1278875..1279231 (-) | 357 | WP_000671949.1 | co-chaperone GroES | - |
| OW489_RS06040 (CHC155_11880) | dnaG | 1279506..1281185 (+) | 1680 | WP_267285925.1 | DNA primase | - |
| OW489_RS06045 (CHC155_11890) | - | 1281182..1282234 (+) | 1053 | WP_267285926.1 | MnmA/TRMU family protein | - |
| OW489_RS06050 (CHC155_11900) | - | 1282325..1283152 (+) | 828 | WP_021301517.1 | DUF5718 family protein | - |
| OW489_RS06055 (CHC155_11910) | comB2 | 1283297..1283578 (+) | 282 | WP_001272690.1 | TrbC/VirB2 family protein | Machinery gene |
| OW489_RS06060 (CHC155_11920) | comB3 | 1283578..1283841 (+) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| OW489_RS06065 (CHC155_11930) | comB4 | 1283843..1286206 (+) | 2364 | WP_267285927.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| OW489_RS06075 (CHC155_11940) | - | 1286527..1287867 (+) | 1341 | WP_041201979.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=96317 OW489_RS06060 WP_000584955.1 1283578..1283841(+) (comB3) [Helicobacter pylori strain CHC155]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=96317 OW489_RS06060 WP_000584955.1 1283578..1283841(+) (comB3) [Helicobacter pylori strain CHC155]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |