Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AADG46_RS07420 Genome accession   NZ_AP028804
Coordinates   1652372..1652683 (-) Length   103 a.a.
NCBI ID   WP_001166106.1    Uniprot ID   A0AAU8WU30
Organism   Vibrio cholerae strain VN152     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1647372..1657683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG46_RS07395 (VNVC001_14050) lapB 1647565..1648734 (-) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -
  AADG46_RS07400 (VNVC001_14060) - 1648746..1649027 (-) 282 WP_000691492.1 LapA family protein -
  AADG46_RS07405 (VNVC001_14070) ihfB 1649166..1649444 (-) 279 WP_000167341.1 integration host factor subunit beta -
  AADG46_RS07410 (VNVC001_14080) rpsA 1649733..1651403 (-) 1671 WP_000140318.1 30S ribosomal protein S1 -
  AADG46_RS07415 (VNVC001_14090) cmk 1651512..1652189 (-) 678 WP_000094752.1 (d)CMP kinase -
  AADG46_RS07420 (VNVC001_14100) comEA 1652372..1652683 (-) 312 WP_001166106.1 ComEA family DNA-binding protein Machinery gene
  AADG46_RS07425 (VNVC001_14110) ppiD 1652818..1654677 (-) 1860 WP_114741183.1 peptidylprolyl isomerase -
  AADG46_RS07430 (VNVC001_14120) - 1654830..1655102 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  AADG46_RS07435 (VNVC001_14130) lon 1655286..1657646 (-) 2361 WP_001047611.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10957.76 Da        Isoelectric Point: 4.7228

>NTDB_id=96317 AADG46_RS07420 WP_001166106.1 1652372..1652683(-) (comEA) [Vibrio cholerae strain VN152]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTQI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=96317 AADG46_RS07420 WP_001166106.1 1652372..1652683(-) (comEA) [Vibrio cholerae strain VN152]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATCAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCAAATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAU8WU30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

99.029

100

0.99
  comEA Vibrio cholerae strain A1552

99.029

100

0.99
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437

Multiple sequence alignment