Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WKF26_RS28010 Genome accession   NZ_CP150139
Coordinates   6323124..6324611 (+) Length   495 a.a.
NCBI ID   WP_369988699.1    Uniprot ID   -
Organism   Pseudomonas xanthosomatis strain YZ03     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 6318124..6329611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKF26_RS27995 - 6318838..6320835 (+) 1998 WP_369988695.1 DUF4034 domain-containing protein -
  WKF26_RS28000 - 6320840..6322645 (+) 1806 WP_369988696.1 M48 family metallopeptidase -
  WKF26_RS28005 - 6322683..6322949 (-) 267 WP_369988697.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  WKF26_RS28010 comM 6323124..6324611 (+) 1488 WP_369988699.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WKF26_RS28015 - 6324880..6325572 (+) 693 WP_369988701.1 RES family NAD+ phosphorylase -
  WKF26_RS28020 - 6325611..6326240 (-) 630 WP_369988702.1 hypothetical protein -
  WKF26_RS28025 - 6326469..6326714 (+) 246 WP_369988704.1 DUF2790 domain-containing protein -
  WKF26_RS28030 - 6326746..6327762 (+) 1017 WP_369988705.1 alpha/beta hydrolase fold domain-containing protein -
  WKF26_RS28035 - 6327877..6328278 (-) 402 WP_369988706.1 DoxX family protein -
  WKF26_RS28040 - 6328861..6329073 (+) 213 WP_369988708.1 hypothetical protein -
  WKF26_RS28045 - 6329075..6329341 (+) 267 WP_217841348.1 DUF3077 domain-containing protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52792.60 Da        Isoelectric Point: 7.5240

>NTDB_id=963141 WKF26_RS28010 WP_369988699.1 6323124..6324611(+) (comM) [Pseudomonas xanthosomatis strain YZ03]
MSLALVHSRAQVGVLAPAVSVETHLANGLPALTLVGLPEATVKESKDRVRSAIVNSGLEYPARRITQNLAPADLPKDGGR
YDLAIALGILAANGQVPLATLEDIECLGELALSGALRPVQGVLPAALAARDAGRALVVPRENAEEASLAGGLVVYAVGHL
QELVAHLSGQLPLPPYAANGLLLEHRPYPDLCEVQGQAAAKRALLVAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIRSVSGHAPLDSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARARDRVRFPARFQLVAAMNPCPCGYFGDPTGRCRCSPEQIQRYRNKLSGPLLDRIDLHLTVARENTVLGNQPSG
ETSASVAKVVAEARELQQRRQGCANAFLALDGLRRHCALAPTDQAWLETACERLTLSLRAAHRLLKVARTLADLEGVETI
TRSHIAEALQYRPGN

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=963141 WKF26_RS28010 WP_369988699.1 6323124..6324611(+) (comM) [Pseudomonas xanthosomatis strain YZ03]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGCTGGCGCCTGCTGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCGCGCTCACCCTGGTCGGCCTGCCGGAGGCCACGGTCAAGGAATCGAAGGACCGGGTACGCAGCGCCATCG
TCAACTCGGGGCTGGAGTACCCGGCCCGGCGCATCACCCAGAACCTCGCCCCTGCCGACCTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATCGCCCTGGGGATACTCGCCGCCAACGGCCAGGTGCCGCTGGCCACCCTCGAAGACATCGAATGCCT
GGGCGAACTGGCACTGTCTGGCGCCCTGCGCCCGGTGCAGGGGGTGCTGCCTGCCGCGCTGGCCGCGCGGGATGCCGGGC
GGGCGTTGGTGGTGCCACGGGAGAATGCCGAAGAAGCCAGCCTGGCGGGCGGGCTGGTGGTCTACGCGGTGGGGCACCTG
CAGGAGCTGGTGGCCCACCTGAGCGGGCAACTGCCGTTGCCGCCCTATGCTGCCAACGGCCTGCTGCTGGAGCATCGCCC
CTACCCCGACCTGTGCGAAGTGCAGGGCCAGGCCGCCGCCAAACGCGCCCTGCTGGTGGCCGCTGCCGGCGCGCACAACC
TGTTGTTCACCGGCCCCCCAGGTACCGGCAAGACCCTGCTGGCCAGCCGCCTGCCCGGCTTGCTGCCACCGCTGGACGAG
CGCGAGGCGTTGGAAGTGGCGGCGATCCGCTCGGTCAGCGGCCACGCTCCGCTCGATAGCTGGCCGCAGCGGCCGTTTCG
CCACCCGCACCACTCCGCCTCCGGCCCGGCACTGGTCGGCGGCGGCAGCCGCCCGCAACCGGGCGAGATCACCCTGGCGC
ACCACGGTGTGCTGTTTCTCGACGAGTTGCCGGAGTTCGAGCGGCGGGTGCTGGAAGTACTGCGCGAGCCGCTGGAGTCG
GGCGAAATCGTGGTGGCCAGGGCCCGCGACCGGGTGCGCTTCCCGGCCCGTTTTCAGCTGGTTGCAGCAATGAACCCCTG
CCCCTGCGGCTACTTCGGCGACCCTACCGGCCGCTGCAGGTGCAGCCCGGAGCAGATCCAGCGCTACCGCAACAAGCTGT
CCGGGCCACTGCTTGACCGCATCGACCTGCACCTGACCGTGGCCCGGGAGAATACCGTGCTGGGCAACCAGCCCAGCGGC
GAGACGAGCGCCAGCGTTGCCAAGGTGGTGGCCGAGGCGCGCGAGCTGCAGCAACGCCGCCAGGGCTGTGCCAATGCCTT
TCTGGCACTCGATGGCCTGCGCCGACACTGCGCATTGGCGCCCACCGACCAGGCCTGGCTGGAAACCGCCTGCGAGCGCC
TGACCCTGTCACTGCGGGCAGCGCACCGGTTGCTGAAGGTGGCGCGCACGCTGGCAGACCTTGAGGGCGTGGAGACTATT
ACAAGATCACATATTGCCGAAGCGCTTCAATATCGCCCAGGCAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.4

100

0.549
  comM Vibrio campbellii strain DS40M4

54.747

100

0.547
  comM Glaesserella parasuis strain SC1401

53.678

100

0.545
  comM Vibrio cholerae strain A1552

54.343

100

0.543
  comM Legionella pneumophila str. Paris

48.992

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.316

100

0.481