Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AADG46_RS07075 Genome accession   NZ_AP028804
Coordinates   1570655..1571659 (-) Length   334 a.a.
NCBI ID   WP_000568494.1    Uniprot ID   -
Organism   Vibrio cholerae strain VN152     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1565655..1576659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG46_RS07045 (VNVC001_13330) tolQ 1565777..1566460 (-) 684 WP_114806559.1 protein TolQ -
  AADG46_RS07050 (VNVC001_13340) ybgC 1566450..1566857 (-) 408 WP_001091290.1 tol-pal system-associated acyl-CoA thioesterase -
  AADG46_RS07055 ybgE 1567026..1567343 (-) 318 WP_001286620.1 cyd operon protein YbgE -
  AADG46_RS07060 cydX 1567336..1567443 (-) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  AADG46_RS07065 (VNVC001_13350) cydB 1567456..1568592 (-) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  AADG46_RS07070 (VNVC001_13360) cydA 1568610..1570196 (-) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  AADG46_RS07075 (VNVC001_13380) ruvB 1570655..1571659 (-) 1005 WP_000568494.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AADG46_RS07080 (VNVC001_13390) ruvA 1571715..1572329 (-) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  AADG46_RS07085 (VNVC001_13400) ruvC 1572423..1572944 (-) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  AADG46_RS07090 (VNVC001_13410) cysS 1573032..1574411 (-) 1380 WP_114730009.1 cysteine--tRNA ligase -
  AADG46_RS07095 (VNVC001_13420) - 1574557..1575051 (+) 495 WP_000631302.1 peptidylprolyl isomerase -
  AADG46_RS07100 (VNVC001_13430) lpxH 1575092..1575832 (+) 741 WP_069730645.1 UDP-2,3-diacylglucosamine diphosphatase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37286.69 Da        Isoelectric Point: 5.0460

>NTDB_id=96313 AADG46_RS07075 WP_000568494.1 1570655..1571659(-) (ruvB) [Vibrio cholerae strain VN152]
MIEADRLIAPTSNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=96313 AADG46_RS07075 WP_000568494.1 1570655..1571659(-) (ruvB) [Vibrio cholerae strain VN152]
ATGATAGAAGCCGATCGTTTAATTGCTCCAACCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGTCCAGCAGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATAGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCGCAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTGCGAGATTATGCCGAAGTGAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCCATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGAGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB AAA lid domain (AAA_lid_4)

(186-259)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.606

98.802

0.599
  ruvB Streptococcus pneumoniae TIGR4

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae R6

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae D39

59.937

94.91

0.569
  ruvB Synechocystis sp. PCC 6803

54.348

96.407

0.524
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494

Multiple sequence alignment