Detailed information NTG0096313

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: OW489_RS05545
• Genome accession: NZ_AP026446
• Coordinates: 1188090..1189292 (-)
• Length: 400 a.a.
• NCBI ID: WP_120856471.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain CHC155
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1183090..1194292

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OW489_RS05520 (CHC155_10910)	-	1183113..1183631 (-)	519	WP_120824236.1	replication regulatory RepB family protein	-
OW489_RS05525 (CHC155_10920)	-	1183628..1184572 (-)	945	WP_120824237.1	CpaF/VirB11 family protein	-
OW489_RS05530 (CHC155_10930)	-	1184577..1184849 (-)	273	WP_205583491.1	hypothetical protein	-
OW489_RS05535 (CHC155_10940)	-	1184867..1185844 (-)	978	WP_120824239.1	hypothetical protein	-
OW489_RS05540 (CHC155_10950)	-	1185857..1188106 (-)	2250	WP_120856469.1	collagen-like protein	-
OW489_RS05545 (CHC155_10960)	comB10	1188090..1189292 (-)	1203	WP_120856471.1	DNA type IV secretion system protein ComB10	Machinery gene
OW489_RS05550 (CHC155_10970)	-	1189289..1190965 (-)	1677	WP_120856473.1	TrbG/VirB9 family P-type conjugative transfer protein	-
OW489_RS05555 (CHC155_10980)	-	1190962..1192131 (-)	1170	WP_120856475.1	VirB8/TrbF family protein	-
OW489_RS05560	-	1192124..1192258 (-)	135	WP_120856477.1	type IV secretion system protein VirB7	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44721.38 Da
• Isoelectric Point: 9.8768

>NTDB_id=96313 OW489_RS05545 WP_120856471.1 1188090..1189292(-) (comB10) [Helicobacter pylori strain CHC155]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPAAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKYTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSDEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=96313 OW489_RS05545 WP_120856471.1 1188090..1189292(-) (comB10) [Helicobacter pylori strain CHC155]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGATTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCTAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTTCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTGCAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGTATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAACGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGTCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAGACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.181	98.25	0.523