Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | OW489_RS05575 | Genome accession | NZ_AP026446 |
| Coordinates | 1195084..1195347 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177712.1 | Uniprot ID | A0AB33Z5Y9 |
| Organism | Helicobacter pylori strain CHC155 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1190084..1200347
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OW489_RS05555 (CHC155_10980) | - | 1190962..1192131 (-) | 1170 | WP_120856475.1 | VirB8/TrbF family protein | - |
| OW489_RS05560 | - | 1192124..1192258 (-) | 135 | WP_120856477.1 | type IV secretion system protein VirB7 | - |
| OW489_RS05565 (CHC155_10990) | - | 1192255..1194837 (-) | 2583 | WP_120856479.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| OW489_RS05570 (CHC155_11000) | - | 1194837..1195073 (-) | 237 | WP_120824245.1 | hypothetical protein | - |
| OW489_RS05575 (CHC155_11010) | comB3 | 1195084..1195347 (-) | 264 | WP_001177712.1 | hypothetical protein | Machinery gene |
| OW489_RS05580 (CHC155_11020) | comB2 | 1195358..1195642 (-) | 285 | WP_000736478.1 | TrbC/VirB2 family protein | Machinery gene |
| OW489_RS05585 (CHC155_11030) | - | 1195639..1196118 (-) | 480 | WP_162966579.1 | hypothetical protein | - |
| OW489_RS05590 (CHC155_11040) | - | 1196222..1197010 (-) | 789 | WP_120856481.1 | integrase | - |
| OW489_RS05595 (CHC155_11050) | - | 1197065..1198969 (+) | 1905 | Protein_1105 | HsdR family type I site-specific deoxyribonuclease | - |
| OW489_RS05600 (CHC155_11060) | - | 1198969..1199676 (+) | 708 | WP_120856482.1 | SprT family zinc-dependent metalloprotease | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10002.89 Da Isoelectric Point: 5.7206
>NTDB_id=96314 OW489_RS05575 WP_001177712.1 1195084..1195347(-) (comB3) [Helicobacter pylori strain CHC155]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=96314 OW489_RS05575 WP_001177712.1 1195084..1195347(-) (comB3) [Helicobacter pylori strain CHC155]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATTGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATTGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
59.77 |
100 |
0.598 |