Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   AADG46_RS07080 Genome accession   NZ_AP028804
Coordinates   1571715..1572329 (-) Length   204 a.a.
NCBI ID   WP_000580350.1    Uniprot ID   A0ABX9FGD2
Organism   Vibrio cholerae strain VN152     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1566715..1577329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG46_RS07055 ybgE 1567026..1567343 (-) 318 WP_001286620.1 cyd operon protein YbgE -
  AADG46_RS07060 cydX 1567336..1567443 (-) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  AADG46_RS07065 (VNVC001_13350) cydB 1567456..1568592 (-) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  AADG46_RS07070 (VNVC001_13360) cydA 1568610..1570196 (-) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  AADG46_RS07075 (VNVC001_13380) ruvB 1570655..1571659 (-) 1005 WP_000568494.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AADG46_RS07080 (VNVC001_13390) ruvA 1571715..1572329 (-) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  AADG46_RS07085 (VNVC001_13400) ruvC 1572423..1572944 (-) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  AADG46_RS07090 (VNVC001_13410) cysS 1573032..1574411 (-) 1380 WP_114730009.1 cysteine--tRNA ligase -
  AADG46_RS07095 (VNVC001_13420) - 1574557..1575051 (+) 495 WP_000631302.1 peptidylprolyl isomerase -
  AADG46_RS07100 (VNVC001_13430) lpxH 1575092..1575832 (+) 741 WP_069730645.1 UDP-2,3-diacylglucosamine diphosphatase -
  AADG46_RS07105 (VNVC001_13440) - 1575928..1577142 (+) 1215 WP_001903180.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22049.75 Da        Isoelectric Point: 5.0954

>NTDB_id=96314 AADG46_RS07080 WP_000580350.1 1571715..1572329(-) (ruvA) [Vibrio cholerae strain VN152]
MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVNERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=96314 AADG46_RS07080 WP_000580350.1 1571715..1572329(-) (ruvA) [Vibrio cholerae strain VN152]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAACTCCCGCCACAAATTTTGATTGAAATCGGCGGGATTGGCTATGA
AGTACAAATGCCCATGAGTTGTATTTACGAACTTCCCAATATTGGTGAAGAAGCCATCATCTATACTCATTTTGTTGTGC
GGGAAGATGCGCAGCTATTGTACGGATTTAACACGGTCAATGAGCGAGCACTCTTTCGCGAGGTGATCAAAGCTAATGGG
GTGGGGCCCAAAATGGGGCTAGCAATACTTTCTGGCATGACAGCAAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGATCTCTTTACTCCTGCAACCGATGCGGCACCTGTCGATTCTACGCCCGTGATTGCCCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAACCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTAGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment