Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | OW489_RS00705 | Genome accession | NZ_AP026446 |
| Coordinates | 153267..154403 (+) | Length | 378 a.a. |
| NCBI ID | WP_267286030.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain CHC155 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 148267..159403
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OW489_RS00670 (CHC155_01340) | panD | 148718..149068 (+) | 351 | WP_140614051.1 | aspartate 1-decarboxylase | - |
| OW489_RS00675 (CHC155_01350) | - | 149079..149372 (+) | 294 | WP_000347922.1 | YbaB/EbfC family nucleoid-associated protein | - |
| OW489_RS00680 (CHC155_01360) | - | 149372..150367 (+) | 996 | WP_267286195.1 | PDZ domain-containing protein | - |
| OW489_RS00685 (CHC155_01370) | comB6 | 150373..151428 (+) | 1056 | WP_267286196.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| OW489_RS00690 | comB7 | 151444..151569 (+) | 126 | WP_140483961.1 | comB7 lipoprotein | Machinery gene |
| OW489_RS00695 (CHC155_01380) | comB8 | 151566..152309 (+) | 744 | WP_267286029.1 | virB8 family protein | Machinery gene |
| OW489_RS00700 (CHC155_01390) | comB9 | 152309..153274 (+) | 966 | WP_212778982.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| OW489_RS00705 (CHC155_01400) | comB10 | 153267..154403 (+) | 1137 | WP_267286030.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| OW489_RS00710 (CHC155_01410) | - | 154473..155885 (+) | 1413 | WP_267286031.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| OW489_RS00715 (CHC155_01420) | gmd | 155900..157045 (+) | 1146 | WP_267286032.1 | GDP-mannose 4,6-dehydratase | - |
| OW489_RS00720 (CHC155_01430) | - | 157038..157970 (+) | 933 | WP_267286033.1 | GDP-L-fucose synthase | - |
| OW489_RS00725 (CHC155_01440) | hypE | 158239..159237 (-) | 999 | WP_267286034.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42071.65 Da Isoelectric Point: 9.9227
>NTDB_id=96305 OW489_RS00705 WP_267286030.1 153267..154403(+) (comB10) [Helicobacter pylori strain CHC155]
MNKWIKGALVFVGGFATIITTSLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWIKGALVFVGGFATIITTSLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=96305 OW489_RS00705 WP_267286030.1 153267..154403(+) (comB10) [Helicobacter pylori strain CHC155]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACAACTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTAATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTTTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACAACTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTAATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTTTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.767 |
100 |
0.958 |