Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | OW489_RS00685 | Genome accession | NZ_AP026446 |
| Coordinates | 150373..151428 (+) | Length | 351 a.a. |
| NCBI ID | WP_267286196.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain CHC155 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 145373..156428
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OW489_RS00655 (CHC155_01310) | - | 145798..146211 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| OW489_RS00660 (CHC155_01320) | - | 146231..146506 (+) | 276 | WP_120858120.1 | ATP-dependent Clp protease adaptor ClpS | - |
| OW489_RS00665 (CHC155_01330) | - | 146506..148728 (+) | 2223 | WP_267286028.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| OW489_RS00670 (CHC155_01340) | panD | 148718..149068 (+) | 351 | WP_140614051.1 | aspartate 1-decarboxylase | - |
| OW489_RS00675 (CHC155_01350) | - | 149079..149372 (+) | 294 | WP_000347922.1 | YbaB/EbfC family nucleoid-associated protein | - |
| OW489_RS00680 (CHC155_01360) | - | 149372..150367 (+) | 996 | WP_267286195.1 | PDZ domain-containing protein | - |
| OW489_RS00685 (CHC155_01370) | comB6 | 150373..151428 (+) | 1056 | WP_267286196.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| OW489_RS00690 | comB7 | 151444..151569 (+) | 126 | WP_140483961.1 | comB7 lipoprotein | Machinery gene |
| OW489_RS00695 (CHC155_01380) | comB8 | 151566..152309 (+) | 744 | WP_267286029.1 | virB8 family protein | Machinery gene |
| OW489_RS00700 (CHC155_01390) | comB9 | 152309..153274 (+) | 966 | WP_212778982.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| OW489_RS00705 (CHC155_01400) | comB10 | 153267..154403 (+) | 1137 | WP_267286030.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| OW489_RS00710 (CHC155_01410) | - | 154473..155885 (+) | 1413 | WP_267286031.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39785.76 Da Isoelectric Point: 8.8165
>NTDB_id=96301 OW489_RS00685 WP_267286196.1 150373..151428(+) (comB6) [Helicobacter pylori strain CHC155]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIVPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIVPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=96301 OW489_RS00685 WP_267286196.1 150373..151428(+) (comB6) [Helicobacter pylori strain CHC155]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGTGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGTGCCTAACATGATCGCACAGAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTCTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCACATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACACCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGTGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGTGCCTAACATGATCGCACAGAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTCTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCACATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACACCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
97.151 |
100 |
0.972 |