Detailed information NTG0096304

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: OW489_RS00700
• Genome accession: NZ_AP026446
• Coordinates: 152309..153274 (+)
• Length: 321 a.a.
• NCBI ID: WP_212778982.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain CHC155
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147309..158274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OW489_RS00670 (CHC155_01340)	panD	148718..149068 (+)	351	WP_140614051.1	aspartate 1-decarboxylase	-
OW489_RS00675 (CHC155_01350)	-	149079..149372 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
OW489_RS00680 (CHC155_01360)	-	149372..150367 (+)	996	WP_267286195.1	PDZ domain-containing protein	-
OW489_RS00685 (CHC155_01370)	comB6	150373..151428 (+)	1056	WP_267286196.1	P-type conjugative transfer protein TrbL	Machinery gene
OW489_RS00690	comB7	151444..151569 (+)	126	WP_140483961.1	comB7 lipoprotein	Machinery gene
OW489_RS00695 (CHC155_01380)	comB8	151566..152309 (+)	744	WP_267286029.1	virB8 family protein	Machinery gene
OW489_RS00700 (CHC155_01390)	comB9	152309..153274 (+)	966	WP_212778982.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
OW489_RS00705 (CHC155_01400)	comB10	153267..154403 (+)	1137	WP_267286030.1	DNA type IV secretion system protein ComB10	Machinery gene
OW489_RS00710 (CHC155_01410)	-	154473..155885 (+)	1413	WP_267286031.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
OW489_RS00715 (CHC155_01420)	gmd	155900..157045 (+)	1146	WP_267286032.1	GDP-mannose 4,6-dehydratase	-
OW489_RS00720 (CHC155_01430)	-	157038..157970 (+)	933	WP_267286033.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36839.39 Da
• Isoelectric Point: 9.3756

>NTDB_id=96304 OW489_RS00700 WP_212778982.1 152309..153274(+) (comB9) [Helicobacter pylori strain CHC155]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=96304 OW489_RS00700 WP_212778982.1 152309..153274(+) (comB9) [Helicobacter pylori strain CHC155]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGTTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAATAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGACAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCACTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.931