Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | AADG46_RS03895 | Genome accession | NZ_AP028804 |
| Coordinates | 826485..827834 (+) | Length | 449 a.a. |
| NCBI ID | WP_000073976.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain VN152 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 821485..832834
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AADG46_RS03870 (VNVC001_07050) | - | 821564..822358 (+) | 795 | WP_000620368.1 | ABC transporter ATP-binding protein | - |
| AADG46_RS03875 (VNVC001_07060) | - | 822526..823995 (+) | 1470 | WP_111674335.1 | sensor domain-containing diguanylate cyclase | - |
| AADG46_RS03880 (VNVC001_07070) | dusC | 824012..824983 (-) | 972 | WP_111674334.1 | tRNA dihydrouridine(16) synthase DusC | - |
| AADG46_RS03885 (VNVC001_07080) | - | 825148..825768 (+) | 621 | WP_111674333.1 | YecA family protein | - |
| AADG46_RS03890 (VNVC001_07090) | lolA | 825864..826460 (+) | 597 | WP_001045827.1 | outer membrane lipoprotein chaperone LolA | - |
| AADG46_RS03895 (VNVC001_07100) | rarA | 826485..827834 (+) | 1350 | WP_000073976.1 | replication-associated recombination protein A | Machinery gene |
| AADG46_RS03900 (VNVC001_07110) | serS | 827938..829245 (+) | 1308 | WP_000887349.1 | serine--tRNA ligase | - |
| AADG46_RS03905 (VNVC001_07120) | bioA | 829353..830633 (-) | 1281 | WP_057568727.1 | adenosylmethionine--8-amino-7-oxononanoate transaminase | - |
| AADG46_RS03910 (VNVC001_07130) | bioB | 830766..831818 (+) | 1053 | WP_000453786.1 | biotin synthase BioB | - |
Sequence
Protein
Download Length: 449 a.a. Molecular weight: 49814.32 Da Isoelectric Point: 6.0310
>NTDB_id=96302 AADG46_RS03895 WP_000073976.1 826485..827834(+) (rarA) [Vibrio cholerae strain VN152]
MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLTSLNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAE
VAGEKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPRGMQVALAAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAY
AAGECYFPPEMSGTRYYQPTQRGLETKIAEKLAYLADLNAKSPQKRYEK
MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLTSLNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAE
VAGEKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPRGMQVALAAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAY
AAGECYFPPEMSGTRYYQPTQRGLETKIAEKLAYLADLNAKSPQKRYEK
Nucleotide
Download Length: 1350 bp
>NTDB_id=96302 AADG46_RS03895 WP_000073976.1 826485..827834(+) (rarA) [Vibrio cholerae strain VN152]
GTGAGTAATTACAGCTTAGATTTTTCCGGCGACGAAGATTTTCGTCCGTTAGCTGCTCGTATGCGTCCACAAACCGTGGA
GCAGTATATTGGTCAGCAACACATCTTAGGGCCGGGAAAACCGCTGCGCCGTGCATTAGAAGCGGGGCATATTCACTCGA
TGATTCTTTGGGGACCACCGGGCACCGGAAAAACCACTTTAGCCGAAGTGGCAGCCAACTACGCCAATGCGGAAGTGGAA
CGCGTATCGGCAGTGACGTCCGGAGTCAAAGAGATACGTGCCGCGATCGAAAAAGCGCGTGAGAACAAACTCAGTGGCCG
CCGCACCATTTTGTTTGTCGACGAAGTCCATCGCTTTAATAAATCGCAGCAAGATGCGTTTTTGCCGCATATTGAAGACG
GTACGGTCACTTTTATTGGCGCAACCACGGAAAACCCTTCTTTTGAGCTTAATAACGCGCTGCTTTCCCGCGCGCGGGTT
TATAAGCTCACCTCACTCAATCAACAAGAAATTCTGCAAGCTCTGCATCAAGCGATTGCCGATACCGAACGCGGGCTTGG
CAAAGTGGCGGCGGTATTTGCTGATAATGTTTTAGATCGCCTAGCCGAACTGGTCAATGGCGATGCGCGCATGTCGCTCA
ATTATCTTGAGCTGCTGTACGACATGGCTCGCGAAGATGATCAGGGACGCAAGCAGATTGATCTGCCTTTATTGGCTGAA
GTCGCTGGTGAAAAAGTGTCGCGCTTTGATAACAAGGGCGATATTTGGTATGACCTGATTTCCGCTGTACACAAATCGAT
TCGAGGTTCCGATCCCGATGCGGCTCTGTATTGGGCGGCGCGGATGATTTCCGCAGGCTGTGACCCTTTGTATATCGCGC
GCCGTCTGCTCGCGATTGCCTCTGAAGATGTTGGTAATGCCGACCCACGGGGCATGCAAGTGGCACTCGCAGCGTGGGAT
TGCTTTACCCGTGTGGGGCCTGCAGAAGGCGAGCGCGCGATTGCTCAAGCGATTGTCTACCTCGCCTGCGCACCGAAAAG
CAATGCGGTGTACACCGCGTGGAAACAAGCGCTGTCGGATGCGCATAATTTGCCTGAGTTTGAAGTACCGCCGCATCTGC
GTAATGCCCCAACGCGATTGATGAAAGATCTCGGTTATGGTGAGGAATACCGTTACGCCCATGATGAACCGGGCGCTTAT
GCTGCAGGGGAGTGCTATTTCCCACCAGAAATGAGTGGAACTCGCTACTATCAGCCTACTCAACGCGGGCTAGAAACTAA
GATTGCTGAAAAGTTAGCGTATCTGGCGGATTTGAACGCAAAAAGCCCACAAAAGCGCTATGAAAAGTAG
GTGAGTAATTACAGCTTAGATTTTTCCGGCGACGAAGATTTTCGTCCGTTAGCTGCTCGTATGCGTCCACAAACCGTGGA
GCAGTATATTGGTCAGCAACACATCTTAGGGCCGGGAAAACCGCTGCGCCGTGCATTAGAAGCGGGGCATATTCACTCGA
TGATTCTTTGGGGACCACCGGGCACCGGAAAAACCACTTTAGCCGAAGTGGCAGCCAACTACGCCAATGCGGAAGTGGAA
CGCGTATCGGCAGTGACGTCCGGAGTCAAAGAGATACGTGCCGCGATCGAAAAAGCGCGTGAGAACAAACTCAGTGGCCG
CCGCACCATTTTGTTTGTCGACGAAGTCCATCGCTTTAATAAATCGCAGCAAGATGCGTTTTTGCCGCATATTGAAGACG
GTACGGTCACTTTTATTGGCGCAACCACGGAAAACCCTTCTTTTGAGCTTAATAACGCGCTGCTTTCCCGCGCGCGGGTT
TATAAGCTCACCTCACTCAATCAACAAGAAATTCTGCAAGCTCTGCATCAAGCGATTGCCGATACCGAACGCGGGCTTGG
CAAAGTGGCGGCGGTATTTGCTGATAATGTTTTAGATCGCCTAGCCGAACTGGTCAATGGCGATGCGCGCATGTCGCTCA
ATTATCTTGAGCTGCTGTACGACATGGCTCGCGAAGATGATCAGGGACGCAAGCAGATTGATCTGCCTTTATTGGCTGAA
GTCGCTGGTGAAAAAGTGTCGCGCTTTGATAACAAGGGCGATATTTGGTATGACCTGATTTCCGCTGTACACAAATCGAT
TCGAGGTTCCGATCCCGATGCGGCTCTGTATTGGGCGGCGCGGATGATTTCCGCAGGCTGTGACCCTTTGTATATCGCGC
GCCGTCTGCTCGCGATTGCCTCTGAAGATGTTGGTAATGCCGACCCACGGGGCATGCAAGTGGCACTCGCAGCGTGGGAT
TGCTTTACCCGTGTGGGGCCTGCAGAAGGCGAGCGCGCGATTGCTCAAGCGATTGTCTACCTCGCCTGCGCACCGAAAAG
CAATGCGGTGTACACCGCGTGGAAACAAGCGCTGTCGGATGCGCATAATTTGCCTGAGTTTGAAGTACCGCCGCATCTGC
GTAATGCCCCAACGCGATTGATGAAAGATCTCGGTTATGGTGAGGAATACCGTTACGCCCATGATGAACCGGGCGCTTAT
GCTGCAGGGGAGTGCTATTTCCCACCAGAAATGAGTGGAACTCGCTACTATCAGCCTACTCAACGCGGGCTAGAAACTAA
GATTGCTGAAAAGTTAGCGTATCTGGCGGATTTGAACGCAAAAAGCCCACAAAAGCGCTATGAAAAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
39.512 |
91.314 |
0.361 |