Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   OW489_RS00695 Genome accession   NZ_AP026446
Coordinates   151566..152309 (+) Length   247 a.a.
NCBI ID   WP_267286029.1    Uniprot ID   -
Organism   Helicobacter pylori strain CHC155     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146566..157309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OW489_RS00670 (CHC155_01340) panD 148718..149068 (+) 351 WP_140614051.1 aspartate 1-decarboxylase -
  OW489_RS00675 (CHC155_01350) - 149079..149372 (+) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  OW489_RS00680 (CHC155_01360) - 149372..150367 (+) 996 WP_267286195.1 PDZ domain-containing protein -
  OW489_RS00685 (CHC155_01370) comB6 150373..151428 (+) 1056 WP_267286196.1 P-type conjugative transfer protein TrbL Machinery gene
  OW489_RS00690 comB7 151444..151569 (+) 126 WP_140483961.1 comB7 lipoprotein Machinery gene
  OW489_RS00695 (CHC155_01380) comB8 151566..152309 (+) 744 WP_267286029.1 virB8 family protein Machinery gene
  OW489_RS00700 (CHC155_01390) comB9 152309..153274 (+) 966 WP_212778982.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  OW489_RS00705 (CHC155_01400) comB10 153267..154403 (+) 1137 WP_267286030.1 DNA type IV secretion system protein ComB10 Machinery gene
  OW489_RS00710 (CHC155_01410) - 154473..155885 (+) 1413 WP_267286031.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  OW489_RS00715 (CHC155_01420) gmd 155900..157045 (+) 1146 WP_267286032.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28681.93 Da        Isoelectric Point: 8.9546

>NTDB_id=96303 OW489_RS00695 WP_267286029.1 151566..152309(+) (comB8) [Helicobacter pylori strain CHC155]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
VPTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=96303 OW489_RS00695 WP_267286029.1 151566..152309(+) (comB8) [Helicobacter pylori strain CHC155]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAACTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGCGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTAGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAGATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GTGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.976

100

0.98

Multiple sequence alignment