Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V8N38_RS24590 Genome accession   NZ_CP149940
Coordinates   5156965..5158488 (+) Length   507 a.a.
NCBI ID   WP_147840469.1    Uniprot ID   -
Organism   Serratia nevei strain LMG 31536     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5151965..5163488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N38_RS24565 (V8N38_24565) - 5152165..5153091 (-) 927 WP_033636413.1 branched-chain amino acid transaminase -
  V8N38_RS24570 (V8N38_24570) ilvM 5153115..5153372 (-) 258 WP_038874702.1 acetolactate synthase 2 small subunit -
  V8N38_RS24575 (V8N38_24575) ilvG 5153369..5155015 (-) 1647 WP_147840468.1 acetolactate synthase 2 catalytic subunit -
  V8N38_RS24580 (V8N38_24580) ilvL 5155158..5155256 (-) 99 WP_013814970.1 ilv operon leader peptide -
  V8N38_RS24585 (V8N38_24585) - 5155390..5156622 (-) 1233 WP_084827060.1 MFS transporter -
  V8N38_RS24590 (V8N38_24590) comM 5156965..5158488 (+) 1524 WP_147840469.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V8N38_RS24595 (V8N38_24595) - 5158517..5158855 (-) 339 WP_048232148.1 DUF413 domain-containing protein -
  V8N38_RS24600 (V8N38_24600) hdfR 5158975..5159802 (+) 828 WP_060425370.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54336.59 Da        Isoelectric Point: 7.5942

>NTDB_id=962326 V8N38_RS24590 WP_147840469.1 5156965..5158488(+) (comM) [Serratia nevei strain LMG 31536]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPEATVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSHSHTARHL
LEVCAFLLGQGELPVAATPPAADTACDNADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
PEALESLAVASLQHHIPAALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSQRKTH
GESSEKVRERVQQARARQLERAGKVNALLSNREVERDCILQAADAEFLEATLNALGLSVRAWQRILKVARTLADLAGDAE
LNRSHLCEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=962326 V8N38_RS24590 WP_147840469.1 5156965..5158488(+) (comM) [Serratia nevei strain LMG 31536]
ATGTCATTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCAGTAACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGTCTGCCAGAAGCCACGGTGAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCACTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCACCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCACTGTCCGGCGCACTGCGCGCGGTCAGGGGCGCGATCCCGGCGGCGCTGGCGGCGGCTGACGCCGGGC
GGCAACTGATCCTCTCGACGGACAACGCCGCCGAAGTCGGCCTGATTGCGCAGTCGCACTCCCATACCGCCCGGCACCTG
TTGGAAGTCTGTGCCTTTCTGCTCGGCCAGGGCGAGCTGCCCGTGGCGGCCACGCCTCCCGCTGCGGACACCGCCTGCGA
CAACGCCGATCTGCGCGACATCATCGGCCAGGAACAGGCCAAGCGGGCTCTGGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTGATTGGGCCGCCGGGCACCGGTAAAACCATGTTGGCCAGCCGCCTCACGGGCTTGCTGCCGCCGCTCACGGAG
CCTGAGGCGCTGGAAAGCCTGGCGGTCGCCAGCTTGCAGCACCATATCCCCGCCGCCCTGCCATGGCGCCAGAGGCCGTT
TCGCGCACCGCATCACAGTGCATCGATGGCGGCGTTGGTCGGCGGCGGCTCACTGCCGCGCCCGGGTGAAATCTCTATGG
CGCATAACGGCGTGCTGTTTCTGGATGAGCTACCGGAATTCGAGCGTAAGGTGCTGGATGCGCTGCGTGAGCCGCTGGAG
TCCGGCGAGATCGTAATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGAGTGCAGTTGATTGCGGCAATGAACCC
CAGCCCGACCGGGCATTATCAGGGGTTACACAATCGCGCCTCGCCGCAGCAGGTATTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTACCGCCGGGTACGCTCAGTCAGCGGAAAACGCAT
GGAGAAAGCAGTGAGAAAGTGCGGGAAAGGGTTCAACAGGCGCGCGCCCGGCAGCTCGAACGCGCCGGGAAAGTCAACGC
GCTGTTGAGCAACCGCGAAGTGGAACGTGATTGCATTCTGCAGGCGGCAGACGCCGAGTTTTTGGAGGCAACATTAAACG
CGCTGGGGTTATCGGTCCGCGCCTGGCAGCGCATTTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGGGATGCGGAG
CTCAACAGGAGCCACCTCTGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGCTGTTACAGCTGCATCGTAGTCTGGA
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

99.803

0.657
  comM Glaesserella parasuis strain SC1401

65.089

100

0.651
  comM Vibrio cholerae strain A1552

65.139

99.014

0.645
  comM Vibrio campbellii strain DS40M4

64.343

99.014

0.637
  comM Legionella pneumophila str. Paris

51.004

98.225

0.501
  comM Legionella pneumophila strain ERS1305867

51.004

98.225

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.882

100

0.45