Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WDB71_RS15675 Genome accession   NZ_CP149925
Coordinates   3257405..3258919 (+) Length   504 a.a.
NCBI ID   WP_341502526.1    Uniprot ID   -
Organism   Gallaecimonas sp. GXIMD4217     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3252405..3263919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDB71_RS15670 (WDB71_15670) - 3252973..3257361 (-) 4389 WP_341502525.1 EAL domain-containing protein -
  WDB71_RS15675 (WDB71_15675) comM 3257405..3258919 (+) 1515 WP_341502526.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WDB71_RS15680 (WDB71_15680) pncB 3258916..3260145 (-) 1230 WP_341502527.1 nicotinate phosphoribosyltransferase -
  WDB71_RS15685 (WDB71_15685) - 3260135..3260779 (-) 645 WP_341502528.1 nicotinamidase -
  WDB71_RS15690 (WDB71_15690) - 3260831..3261388 (-) 558 WP_341502529.1 carboxymuconolactone decarboxylase family protein -
  WDB71_RS15695 (WDB71_15695) speE 3261478..3262338 (-) 861 WP_341502530.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53389.54 Da        Isoelectric Point: 7.9979

>NTDB_id=962228 WDB71_RS15675 WP_341502526.1 3257405..3258919(+) (comM) [Gallaecimonas sp. GXIMD4217]
MALATLLCRAQLGMEAPLVKVEVDIGNGLPSFGLVGLPDAAVREAKERVRSALLNCGFEFPARRITINLAPAELPKDGGR
FDLAMALGILAASGQLPAAGLKGLECYGELGLGGELRPCGALLPALLACRDAGHSAIISEGDGAEAALLDFPGCAQAHQL
LDVCAALGGQQQLALPSRAQQAEAPAPGPDLSDVVGQVGAKRALLIAASGNHNLLMVGPPGTGKSMLAKRLPSLLPPLAD
GAALETAAIHSLSGKPRRLGDWRTPPIRAPHHTASAVALVGGGSVPRPGEISLAHQGVLFLDELTEYDRKVLDCLREPLE
SGEVSISRAAQQANFPARFMLVAATNPCPCGHWGNPARECRCSPEQIRRYLGRLSGPFLDRVELQVEVPMLPPGALSGQE
RGQGSAELRARVGDCRRRQRARQHCLNGELEGQALRRHCALDGELAAWYEQTLHRLGLSARVHQRLLKVARTVADLDGSD
RIRRPHLAEALSYRAMDRLLASLA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=962228 WDB71_RS15675 WP_341502526.1 3257405..3258919(+) (comM) [Gallaecimonas sp. GXIMD4217]
ATGGCATTAGCAACACTGCTCTGCCGTGCCCAGCTGGGCATGGAGGCGCCCCTGGTCAAGGTGGAGGTGGATATCGGCAA
CGGCCTGCCGTCCTTCGGCCTGGTGGGACTGCCCGACGCCGCCGTGCGCGAGGCCAAGGAAAGGGTGCGCTCGGCCCTGC
TCAACTGTGGCTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCCCCGGCGGAGCTGCCCAAGGACGGCGGCCGC
TTCGATCTGGCCATGGCCCTGGGCATACTGGCCGCCTCCGGCCAGCTGCCGGCCGCCGGCCTCAAGGGCCTGGAATGTTA
CGGCGAGCTGGGCCTGGGCGGCGAACTGCGCCCCTGCGGCGCCCTGCTGCCGGCCCTGCTGGCCTGCCGTGACGCCGGTC
ACAGCGCTATCATCAGCGAAGGGGACGGCGCCGAGGCGGCGCTGCTGGACTTCCCGGGCTGCGCCCAGGCCCACCAGCTG
CTGGATGTCTGCGCCGCCCTTGGCGGCCAGCAGCAACTGGCCCTGCCCAGTCGGGCACAACAGGCCGAGGCGCCGGCGCC
GGGCCCGGATCTCAGCGACGTGGTGGGCCAGGTGGGGGCCAAGCGGGCGCTGCTGATCGCCGCCAGCGGCAACCATAACC
TCTTGATGGTGGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAAGCGGCTGCCGAGCCTGCTGCCGCCCCTGGCCGAC
GGCGCCGCCCTGGAAACGGCCGCCATCCATTCCCTGTCCGGCAAGCCGCGCCGCCTTGGCGACTGGCGCACCCCGCCTAT
TCGCGCCCCCCACCACACCGCCTCGGCGGTGGCCCTGGTCGGCGGCGGCTCGGTGCCCAGGCCGGGGGAGATCTCCCTGG
CCCACCAGGGGGTGCTGTTCCTGGACGAGCTGACCGAGTACGACCGCAAGGTGCTGGACTGCCTGCGCGAGCCCCTGGAG
AGCGGCGAGGTCAGCATCAGCCGCGCCGCCCAGCAGGCCAACTTCCCGGCCCGCTTCATGCTGGTGGCGGCCACCAACCC
CTGTCCCTGTGGCCATTGGGGCAACCCGGCGCGGGAGTGCCGCTGCAGCCCGGAGCAGATCCGCCGCTACCTGGGCCGGC
TCAGCGGCCCCTTCCTGGACAGGGTCGAGCTGCAGGTGGAGGTGCCCATGCTGCCCCCGGGCGCCCTGAGCGGCCAGGAA
AGGGGCCAGGGCAGCGCCGAGCTGCGCGCCCGGGTAGGGGATTGCCGCCGGCGCCAGCGAGCGCGCCAGCACTGCCTCAA
CGGTGAGCTGGAAGGCCAGGCCCTGCGCCGCCACTGCGCCCTGGATGGCGAGCTGGCCGCCTGGTACGAGCAGACGTTGC
ACCGGCTGGGGCTGTCGGCCCGGGTACACCAGCGGCTGCTGAAGGTGGCCAGGACGGTGGCGGATCTGGACGGCAGCGAC
CGCATCCGCCGGCCGCACCTGGCCGAGGCCCTGTCCTACCGGGCCATGGACAGGCTGCTGGCCTCCCTGGCCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-138)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.348

100

0.546
  comM Glaesserella parasuis strain SC1401

52.362

100

0.528
  comM Vibrio cholerae strain A1552

52.673

100

0.528
  comM Haemophilus influenzae Rd KW20

52.259

100

0.528
  comM Legionella pneumophila str. Paris

48.617

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.617

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.944

98.413

0.423