Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QN032_RS24995 Genome accession   NZ_CP149888
Coordinates   5095346..5096866 (+) Length   506 a.a.
NCBI ID   WP_002883134.1    Uniprot ID   A0A0H3GGF6
Organism   Klebsiella pneumoniae strain 3226     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5090346..5101866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN032_RS24970 (QN032_24925) ilvE 5091906..5092835 (-) 930 WP_064147304.1 branched-chain-amino-acid transaminase -
  QN032_RS24975 (QN032_24930) ilvM 5092852..5093109 (-) 258 WP_002883170.1 acetolactate synthase 2 small subunit -
  QN032_RS24980 (QN032_24935) ilvG 5093106..5094752 (-) 1647 WP_012737117.1 acetolactate synthase 2 catalytic subunit -
  QN032_RS24985 ilvX 5094755..5094808 (-) 54 WP_201553214.1 peptide IlvX -
  QN032_RS24990 (QN032_24940) ilvL 5094893..5094991 (-) 99 WP_001311244.1 ilv operon leader peptide -
  QN032_RS24995 (QN032_24945) comM 5095346..5096866 (+) 1521 WP_002883134.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QN032_RS25000 (QN032_24950) - 5096891..5097229 (-) 339 WP_004146520.1 DUF413 domain-containing protein -
  QN032_RS25005 (QN032_24955) hdfR 5097348..5098169 (+) 822 WP_021312961.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55187.59 Da        Isoelectric Point: 8.3554

>NTDB_id=962112 QN032_RS24995 WP_002883134.1 5095346..5096866(+) (comM) [Klebsiella pneumoniae strain 3226]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPARDERYEDLLDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGSQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKNCCRLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEVEEI
ERCHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=962112 QN032_RS24995 WP_002883134.1 5095346..5096866(+) (comM) [Klebsiella pneumoniae strain 3226]
ATGTCGCTCGCTATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACCGTTGAGGTTCATCTCAGCAA
CGGTCTTCCTGGTCTAACTATGGTCGGGCTGCCGGAAACCACCGTGAAAGAGGCCCGCGACCGGGTCCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTTCCTGCGAAGAAGATAACCATTAACCTGGCGCCAGCGGATCTGCCCAAAGAAGGCGGACGA
TACGATCTGCCCATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGTGGGTTACGAGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCGGAGGTCGGCCTGATCGGCGGCAGCGATTGTCTGGTCGCCGACCATCTG
CAGGAGGTTTGCGCATTTCTTGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCGCCTGCTCGGGATGAACGCTA
CGAAGATCTGCTCGATGTTATCGGCCAGCAGCAGGGCAAACGAGCGCTGGAGATTGTGGCCGCCGGTGGTCACAACCTGC
TCCTGATAGGCCCGCCCGGGACCGGGAAAACCATGCTAGCCAGCCGACTCCCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCGCTGGAGAGCGCGGCCATACAGAGTCTGGTCAACCTCCACACCGCAAAGACGCGGTGGCGTCAGAGGCCGTTCCG
CGCCCCCCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCGGAGTTTGAGCGGCGGGTACTGGATGCGCTACGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATTGCAGCGATGAATCCAAG
CCCGACAGGACATTATCAGGGTAAACATAATCGTGCATCGCCGGAGCAGACATTGCGCTACCTTGGACGCCTGTCAGGCC
CCTTCCTCGACCGCTTCGATCTTTCCTTAGAGATCCCATTGCCGCCGCCAGGAATACTGAGTCAGGGCTCGCAGGGCGAA
GAATCGAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGTGAACGACAAATGCTCAGGCAAAATAAACTCAATGCCCA
TCTTGAGAATCGTGAAATGAAGAACTGCTGCCGCTTAAGGCGGGAGGATGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTTTCTATTCGCGCCTGGCAGCGTCTGTTAAAGGTTGCGAGAACCATTGCCGATCTGGCAGAGGTTGAAGAGATT
GAACGCTGTCATTTGCAGGAGGCGCTCAGCTATCGGGCAATTGATCGGATGCTCAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GGF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.078

100

0.607
  comM Glaesserella parasuis strain SC1401

59.725

100

0.601
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Legionella pneumophila str. Paris

50.201

98.419

0.494
  comM Legionella pneumophila strain ERS1305867

50.201

98.419

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.488

100

0.447