Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WKU38_RS22130 Genome accession   NZ_CP149853
Coordinates   4692522..4694042 (+) Length   506 a.a.
NCBI ID   WP_202762208.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 2024CK-00035     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4687522..4699042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKU38_RS22105 (WKU38_22105) ilvE 4689088..4690017 (-) 930 WP_023326297.1 branched-chain-amino-acid transaminase -
  WKU38_RS22110 (WKU38_22110) ilvM 4690036..4690299 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  WKU38_RS22115 (WKU38_22115) ilvG 4690296..4691942 (-) 1647 WP_121423338.1 acetolactate synthase 2 catalytic subunit -
  WKU38_RS22120 (WKU38_22120) ilvX 4691945..4691995 (-) 51 WP_193941730.1 peptide IlvX -
  WKU38_RS22125 (WKU38_22125) ilvL 4692082..4692180 (-) 99 WP_001311244.1 ilv operon leader peptide -
  WKU38_RS22130 (WKU38_22130) comM 4692522..4694042 (+) 1521 WP_202762208.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WKU38_RS22135 (WKU38_22135) - 4694073..4694411 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  WKU38_RS22140 (WKU38_22140) hdfR 4694530..4695351 (+) 822 WP_339275668.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54951.91 Da        Isoelectric Point: 6.9623

>NTDB_id=961981 WKU38_RS22130 WP_202762208.1 4692522..4694042(+) (comM) [Enterobacter asburiae strain 2024CK-00035]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=961981 WKU38_RS22130 WP_202762208.1 4692522..4694042(+) (comM) [Enterobacter asburiae strain 2024CK-00035]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGTAA
TGGGCTACCTGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATGCCTTCCCCGCGAAGAAGATCACCATCAACCTTGCGCCCGCCGATCTGCCCAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGTGCTGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGCCTCATCGCGGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGACATGAACTGTCCGAGCCGGAGGAGTGTGATGATGTTATAGCGGATGCTCC
AGAGGATCTCAGCGAGATTATGGGGCAAGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGTCCGCCGGGTACGGGTAAAACGATGCTGGCAAGCAGGTTGAGTGGGTTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATACAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGAGGGTCTATCCCCGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGCTGCCGGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGCGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCGCGGTTTCAGCTGGTCGCGGCAATGAACCCCAG
CCCGACGGGTCATTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTACGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGTATAACGGGT
GAAAGCTCAGCGGATGTACGCGAGCGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCGCG
GCTGGATAATGCCGGGATCCGACAGTTCTGTTCTCTTAACGTCGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTACTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.847

99.407

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441