Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WKU38_RS01580 Genome accession   NZ_CP149853
Coordinates   360879..361409 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter asburiae strain 2024CK-00035     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 355879..366409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKU38_RS01560 (WKU38_01560) aphA 356202..356915 (+) 714 WP_024906720.1 acid phosphatase AphA -
  WKU38_RS01565 (WKU38_01565) - 357029..357445 (+) 417 WP_029740213.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WKU38_RS01570 (WKU38_01570) - 357448..357801 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  WKU38_RS01575 (WKU38_01575) uvrA 357805..360627 (-) 2823 WP_029740212.1 excinuclease ABC subunit UvrA -
  WKU38_RS01580 (WKU38_01580) ssb 360879..361409 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WKU38_RS01585 (WKU38_01585) - 361472..361753 (-) 282 WP_193941017.1 YjcB family protein -
  WKU38_RS01590 (WKU38_01590) - 362398..363963 (+) 1566 WP_111964200.1 EAL domain-containing protein -
  WKU38_RS01595 (WKU38_01595) soxS 363970..364296 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  WKU38_RS01600 (WKU38_01600) soxR 364395..364853 (+) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  WKU38_RS01605 (WKU38_01605) - 365206..365877 (+) 672 WP_252034450.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=961964 WKU38_RS01580 WP_023310055.1 360879..361409(+) (ssb) [Enterobacter asburiae strain 2024CK-00035]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=961964 WKU38_RS01580 WP_023310055.1 360879..361409(+) (ssb) [Enterobacter asburiae strain 2024CK-00035]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTAGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGTGGCGCACAGTCACGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364