Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   WJU16_RS25035 Genome accession   NZ_CP149822
Coordinates   5874868..5875137 (+) Length   89 a.a.
NCBI ID   WP_341838694.1    Uniprot ID   -
Organism   Chitinophaga pollutisoli strain GPA1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5869868..5880137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJU16_RS25015 (WJU16_25015) - 5870615..5871946 (+) 1332 WP_341836085.1 FAD-binding oxidoreductase -
  WJU16_RS25020 (WJU16_25020) - 5871984..5872715 (+) 732 WP_341836086.1 SDR family oxidoreductase -
  WJU16_RS25025 (WJU16_25025) - 5872712..5873305 (+) 594 WP_341836087.1 HAD family hydrolase -
  WJU16_RS25030 (WJU16_25030) - 5873477..5874852 (+) 1376 Protein_4925 ABC transporter ATP-binding protein -
  WJU16_RS25035 (WJU16_25035) rcrQ 5874868..5875137 (+) 270 WP_341838694.1 hypothetical protein Regulator
  WJU16_RS25040 (WJU16_25040) - 5875139..5875894 (-) 756 WP_341836088.1 LytTR family DNA-binding domain-containing protein -
  WJU16_RS25045 (WJU16_25045) - 5875905..5876894 (-) 990 WP_341836089.1 histidine kinase -
  WJU16_RS25050 (WJU16_25050) - 5877038..5877211 (+) 174 WP_341836090.1 hypothetical protein -

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 10009.51 Da        Isoelectric Point: 5.1695

>NTDB_id=961732 WJU16_RS25035 WP_341838694.1 5874868..5875137(+) (rcrQ) [Chitinophaga pollutisoli strain GPA1]
MLKNPRILILDEATSALDSESEKLVQEALEKLMEGRTSIVIAHRLSTVRRADMILVLDKGQVAEAGTHEELMRRSEGLYR
GLSELQFSN

Nucleotide


Download         Length: 270 bp        

>NTDB_id=961732 WJU16_RS25035 WP_341838694.1 5874868..5875137(+) (rcrQ) [Chitinophaga pollutisoli strain GPA1]
GTGCTGAAGAACCCCCGCATCCTCATCCTCGACGAAGCCACCTCCGCCCTCGATTCCGAATCGGAGAAACTCGTGCAGGA
AGCGCTCGAAAAACTCATGGAAGGCCGAACCTCCATCGTCATCGCCCACCGCCTGAGCACCGTGCGCCGGGCCGATATGA
TCCTGGTGCTCGACAAAGGCCAGGTGGCCGAGGCCGGCACCCACGAAGAGCTGATGCGCCGTTCGGAAGGGTTGTACCGC
GGCCTCAGCGAACTGCAATTCTCCAATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.409

98.876

0.528
  comA Streptococcus gordonii str. Challis substr. CH1

45.122

92.135

0.416
  comA/nlmT Streptococcus mutans UA159

43.902

92.135

0.404
  comA Streptococcus pneumoniae Rx1

41.463

92.135

0.382
  comA Streptococcus pneumoniae D39

41.463

92.135

0.382
  comA Streptococcus pneumoniae R6

41.463

92.135

0.382
  comA Streptococcus mitis SK321

41.463

92.135

0.382
  comA Streptococcus mitis NCTC 12261

41.463

92.135

0.382
  comA Streptococcus pneumoniae TIGR4

41.463

92.135

0.382
  rcrP Streptococcus mutans UA159

38.372

96.629

0.371