Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WKW49_RS18505 Genome accession   NZ_CP149819
Coordinates   4652371..4653909 (+) Length   512 a.a.
NCBI ID   WP_339074518.1    Uniprot ID   -
Organism   Teredinibacter turnerae strain SR02026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4647371..4658909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKW49_RS18490 (WKW49_18490) - 4649302..4649754 (-) 453 WP_339074515.1 hypothetical protein -
  WKW49_RS18495 (WKW49_18495) - 4650132..4651424 (-) 1293 WP_339074516.1 hypothetical protein -
  WKW49_RS18500 (WKW49_18500) - 4651640..4651897 (+) 258 WP_339074517.1 accessory factor UbiK family protein -
  WKW49_RS18505 (WKW49_18505) comM 4652371..4653909 (+) 1539 WP_339074518.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WKW49_RS18510 (WKW49_18510) - 4653934..4654305 (+) 372 WP_018277563.1 VOC family protein -
  WKW49_RS18515 (WKW49_18515) - 4654374..4654661 (+) 288 WP_339074519.1 hypothetical protein -
  WKW49_RS18520 (WKW49_18520) - 4654658..4655569 (-) 912 WP_015820908.1 response regulator -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 55761.03 Da        Isoelectric Point: 8.0274

>NTDB_id=961722 WKW49_RS18505 WP_339074518.1 4652371..4653909(+) (comM) [Teredinibacter turnerae strain SR02026]
MSLAIVYTRAQLGIESPLVTVETHLSGGLPGFTIVGLPEAAVKESKDRVRSALLNSHFEFPQQRITVNLAPADLPKEGGR
YDLAIALGILAASGQIPDQTLENYEFIGELALSGDLRRIRGAIPVAIACGNENRTLVLPSENAAEAALSKKTDVLIAPNL
LSVCAHLHQREPLTPPEKPLSHEAFYPIDMADVKGQAQARRALEIAASGGHNLLFYGPPGTGKSMLASRLPTIMPPLNDD
EALEVAAIKSVSSHSSGGDWLARPFRSPHHTSSGVALVGGGTHPRPGEISLSHKGVLFLDELPEFPRQVLEVLREPLESG
KICVSRASAQVEFPARFQLIAAMNPCPCGFLNDGTGRCRCTPQQISRYRDKISGPLLDRIDLQIHVASIPLEELQKKAEG
ESSCTIRKRVMRTRARQLMRQGKPNAELQGKELTRYCDLGKQEAQLLATALQRLHLSARAYDRVLRVARTIADMNECDKI
STVHVSEALGYRNLDRANVEPMKPRPLGVSEY

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=961722 WKW49_RS18505 WP_339074518.1 4652371..4653909(+) (comM) [Teredinibacter turnerae strain SR02026]
ATGTCACTTGCTATCGTATATACCCGGGCACAGCTGGGTATTGAATCACCATTGGTCACCGTGGAAACGCATCTTTCGGG
CGGCTTGCCGGGTTTTACAATTGTCGGCCTCCCGGAGGCGGCGGTTAAGGAAAGCAAAGATCGCGTGCGCAGCGCTCTCC
TTAACAGTCACTTTGAATTCCCCCAACAGCGGATTACGGTCAATCTGGCGCCGGCAGACCTGCCCAAAGAAGGTGGCCGC
TACGATCTGGCCATCGCACTCGGAATTCTCGCCGCCTCTGGCCAGATCCCCGATCAAACACTCGAGAACTACGAATTTAT
CGGCGAACTTGCCCTCAGTGGCGATTTACGGCGCATCCGTGGCGCCATCCCCGTGGCCATCGCCTGTGGCAACGAGAATC
GCACCCTGGTACTGCCCAGTGAAAACGCAGCGGAAGCCGCACTTAGTAAAAAGACCGACGTGCTGATTGCACCCAATTTA
TTGAGCGTGTGCGCACACCTTCACCAACGTGAGCCCTTAACCCCCCCCGAAAAACCACTCAGCCACGAGGCGTTTTACCC
CATCGATATGGCCGATGTGAAAGGCCAGGCGCAAGCCAGACGCGCACTGGAAATCGCTGCCAGCGGTGGTCACAATCTGC
TGTTTTACGGGCCACCCGGCACCGGTAAATCCATGCTGGCATCCCGCCTGCCCACCATTATGCCCCCGCTCAACGACGAC
GAAGCGCTGGAAGTCGCCGCTATCAAATCGGTCTCCAGCCACAGCAGCGGCGGTGACTGGCTCGCGCGCCCATTTCGCTC
TCCCCACCACACGTCGTCTGGCGTTGCCCTTGTCGGCGGCGGCACTCACCCCCGCCCCGGCGAAATCTCGCTCTCCCACA
AGGGTGTGTTGTTTTTGGATGAGCTTCCTGAGTTTCCCCGGCAGGTGCTGGAAGTTCTCAGAGAGCCATTGGAAAGCGGC
AAGATTTGTGTCTCCCGCGCCAGTGCTCAGGTAGAGTTTCCGGCAAGATTTCAGTTAATAGCGGCGATGAACCCCTGTCC
TTGCGGATTTCTGAACGACGGCACCGGCCGTTGTCGCTGTACACCGCAGCAAATTTCCCGTTATCGGGATAAAATTTCCG
GGCCACTGCTGGATCGAATCGATCTGCAAATTCACGTGGCCAGTATTCCGCTGGAAGAACTGCAGAAAAAAGCCGAAGGT
GAAAGCAGCTGCACCATACGCAAACGGGTGATGCGCACCCGCGCCCGCCAGCTTATGCGCCAGGGCAAACCCAACGCAGA
ACTGCAAGGCAAGGAACTCACCCGCTATTGCGATCTCGGCAAGCAGGAAGCGCAGTTACTGGCAACCGCGCTGCAACGTT
TACATTTGTCAGCGCGCGCATATGACCGTGTGCTGCGGGTTGCGCGTACCATTGCCGATATGAACGAGTGCGACAAGATC
AGTACGGTTCATGTATCCGAAGCACTCGGCTATCGCAATCTCGACCGGGCAAATGTGGAGCCAATGAAACCACGCCCCTT
GGGGGTCTCTGAGTACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.91

97.461

0.535
  comM Glaesserella parasuis strain SC1401

54.167

98.438

0.533
  comM Legionella pneumophila strain ERS1305867

53.831

96.875

0.521
  comM Legionella pneumophila str. Paris

53.831

96.875

0.521
  comM Vibrio campbellii strain DS40M4

53.307

97.461

0.52
  comM Haemophilus influenzae Rd KW20

52.883

98.242

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.548

99.023

0.461