Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WKI14_RS19015 Genome accession   NZ_CP149818
Coordinates   4760090..4761628 (+) Length   512 a.a.
NCBI ID   WP_015817753.1    Uniprot ID   C5BI76
Organism   Teredinibacter turnerae strain SR01903     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4755090..4766628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI14_RS18995 (WKI14_18995) - 4755429..4756271 (-) 843 WP_339066248.1 RHS repeat-associated core domain-containing protein -
  WKI14_RS19000 (WKI14_19000) - 4757034..4757486 (-) 453 WP_339066250.1 hypothetical protein -
  WKI14_RS19005 (WKI14_19005) - 4757860..4759152 (-) 1293 WP_015820280.1 hypothetical protein -
  WKI14_RS19010 (WKI14_19010) - 4759368..4759625 (+) 258 WP_015817286.1 accessory factor UbiK family protein -
  WKI14_RS19015 (WKI14_19015) comM 4760090..4761628 (+) 1539 WP_015817753.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WKI14_RS19020 (WKI14_19020) - 4761653..4762024 (+) 372 WP_015820591.1 VOC family protein -
  WKI14_RS19025 (WKI14_19025) - 4762093..4762380 (+) 288 WP_015819164.1 hypothetical protein -
  WKI14_RS19030 (WKI14_19030) - 4762377..4763288 (-) 912 WP_015820908.1 response regulator -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 55789.08 Da        Isoelectric Point: 8.0274

>NTDB_id=961699 WKI14_RS19015 WP_015817753.1 4760090..4761628(+) (comM) [Teredinibacter turnerae strain SR01903]
MSLAIVYTRAQLGIESPLVTVETHLSGGLPGFTIVGLPEAAVKESKDRVRSALLNSHFEFPQQRITVNLAPADLPKEGGR
YDLAIALGILAASGQIPDQTLENYEFIGELALSGDLRRIRGAIPVAIACGNENRTLVLPSENATEAALSKKTDVLIAPNL
LSVCAHLHQREPLTPPEKPLTHEAFYPIDMADVKGQAQARRALEIAASGGHNLLFYGPPGTGKSMLASRLPTIMPPLNDD
EALEVAAIKSVSSHTSGGDWLARPFRSPHHTSSGVALVGGGTHPRPGEISLSHKGVLFLDELPEFPRQVLEVLREPLESG
KICVSRASAQVEFPARFQLIAAMNPCPCGFLNDGTGRCRCTPQQISRYRDKISGPLLDRIDLQIHVASIPLEELQKKAEG
ESSCTIRKRVMRTRARQLMRQGKPNAELQGKELARYCDLGKQEAQLLATALQRLHLSARAYDRVLRVARTIADMNECDKI
STVHVSEALGYRNLDRANVEPMKPRPLGVSEY

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=961699 WKI14_RS19015 WP_015817753.1 4760090..4761628(+) (comM) [Teredinibacter turnerae strain SR01903]
ATGTCACTTGCTATCGTATATACCCGGGCACAGCTGGGTATTGAATCACCATTGGTCACCGTGGAAACGCATCTTTCGGG
CGGCTTGCCGGGTTTTACAATTGTCGGCCTCCCGGAGGCGGCGGTTAAGGAAAGCAAAGATCGCGTGCGCAGCGCTCTCC
TTAACAGTCACTTTGAATTCCCCCAACAGCGGATTACGGTCAATCTGGCGCCGGCAGACCTGCCCAAAGAAGGTGGCCGC
TACGATCTGGCCATCGCACTCGGAATTCTCGCCGCCTCTGGCCAGATCCCCGATCAAACACTCGAGAACTACGAATTTAT
CGGCGAACTTGCCCTCAGTGGCGATTTACGGCGCATCCGTGGCGCCATCCCCGTGGCCATCGCCTGTGGCAACGAGAATC
GCACCCTGGTACTGCCCAGTGAAAACGCAACGGAAGCCGCACTTAGTAAGAAGACCGATGTACTGATTGCGCCCAATTTA
TTGAGCGTGTGCGCACACCTTCACCAACGTGAACCCTTAACCCCCCCCGAAAAGCCACTCACCCACGAGGCGTTTTACCC
CATCGATATGGCCGATGTGAAAGGCCAGGCGCAAGCCAGACGCGCACTGGAAATCGCTGCCAGCGGTGGTCACAATCTGC
TGTTTTACGGGCCACCCGGCACCGGTAAATCCATGCTGGCATCCCGCCTGCCCACCATTATGCCCCCGCTCAACGACGAC
GAAGCGCTGGAAGTCGCCGCTATCAAATCGGTCTCCAGCCACACCAGCGGCGGTGACTGGCTCGCGCGCCCATTTCGCTC
TCCCCACCACACGTCGTCTGGCGTTGCCCTTGTCGGCGGCGGCACTCACCCCCGCCCCGGCGAAATCTCGCTCTCCCACA
AGGGTGTGTTGTTTTTGGATGAGCTGCCTGAGTTTCCCCGGCAGGTGCTGGAAGTTCTCAGAGAGCCATTGGAAAGCGGC
AAGATTTGTGTCTCCCGCGCCAGTGCCCAGGTAGAGTTTCCGGCAAGATTTCAGTTAATCGCGGCGATGAACCCCTGTCC
TTGCGGATTTCTGAACGACGGCACCGGCCGTTGTCGCTGTACACCGCAGCAAATTTCCCGTTATCGGGATAAAATTTCCG
GGCCACTGCTGGATCGAATCGATTTGCAAATTCATGTGGCCAGTATTCCACTGGAAGAACTGCAGAAAAAAGCCGAAGGT
GAAAGCAGCTGCACCATACGCAAACGGGTAATGCGTACCCGCGCCCGCCAGCTTATGCGCCAGGGCAAACCCAACGCAGA
ATTGCAAGGCAAGGAACTCGCCCGCTATTGCGATCTCGGCAAGCAGGAAGCGCAGTTACTGGCAACCGCGCTGCAACGTT
TACATTTGTCAGCACGCGCATACGACCGTGTGCTGCGGGTTGCGCGTACCATTGCCGATATGAACGAATGCGACAAGATC
AGTACGGTTCATGTATCCGAAGCACTCGGCTATCGCAATCTCGACCGGGCAAATGTGGAGCCAATGAAACCACGCCCCTT
GGGGGTCTCTGAGTACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5BI76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.91

97.461

0.535
  comM Glaesserella parasuis strain SC1401

53.968

98.438

0.531
  comM Vibrio campbellii strain DS40M4

53.307

97.461

0.52
  comM Haemophilus influenzae Rd KW20

52.883

98.242

0.52
  comM Legionella pneumophila str. Paris

53.629

96.875

0.52
  comM Legionella pneumophila strain ERS1305867

53.629

96.875

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.746

99.023

0.463