Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WKI13_RS01650 Genome accession   NZ_CP149817
Coordinates   391139..392677 (-) Length   512 a.a.
NCBI ID   WP_018277564.1    Uniprot ID   -
Organism   Teredinibacter turnerae strain T7902     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 386139..397677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI13_RS01635 (WKI13_01635) - 389478..390389 (+) 912 WP_015820908.1 response regulator -
  WKI13_RS01640 (WKI13_01640) - 390386..390673 (-) 288 WP_018277562.1 hypothetical protein -
  WKI13_RS01645 (WKI13_01645) - 390743..391114 (-) 372 WP_018277563.1 VOC family protein -
  WKI13_RS01650 (WKI13_01650) comM 391139..392677 (-) 1539 WP_018277564.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WKI13_RS01655 (WKI13_01655) - 393409..393666 (-) 258 WP_018275328.1 accessory factor UbiK family protein -
  WKI13_RS01660 (WKI13_01660) - 393882..395174 (+) 1293 WP_018275329.1 hypothetical protein -
  WKI13_RS01665 (WKI13_01665) - 395552..396004 (+) 453 WP_018275330.1 hypothetical protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 55775.05 Da        Isoelectric Point: 8.0274

>NTDB_id=961655 WKI13_RS01650 WP_018277564.1 391139..392677(-) (comM) [Teredinibacter turnerae strain T7902]
MSLAIVYTRAQLGIESPLVTVETHLSGGLPGFTIVGLPEAAVKESKDRVRSALLNSHFEFPQQRITVNLAPADLPKEGGR
YDLAIALGILAASGQIPDQTLENYEFIGELALSGDLRRIRGAIPVAIACGNENRTLVLPSENAAEAALSKKTDVLIAPNL
LSVCAHLHQREPLTPPEKPLSHEAFYPIDMADVKGQAQARRALEIAASGGHNLLFYGPPGTGKSMLASRLPTIMPPLNDD
EALEVAAIKSVSSHTSGGDWLARPFRSPHHTSSGVALVGGGTHPRPGEISLSHKGVLFLDELPEFPRQVLEVLREPLESG
KICVSRASAQVEFPARFQLIAAMNPCPCGFLNDGTGRCRCTPQQISRYRDKISGPLLDRIDLQIHVASIPLEELQKKAEG
ESSCTIRKRVMRTRARQLMRQGKPNAELQGKELTRYCDLGKQEAQLLATALQRLHLSARAYDRVLRVARTIADMNECDKI
STVHVSEALGYRNLDRANVEPMKPRPLGVSEY

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=961655 WKI13_RS01650 WP_018277564.1 391139..392677(-) (comM) [Teredinibacter turnerae strain T7902]
ATGTCACTTGCTATCGTATATACCCGGGCACAGCTGGGTATTGAATCACCATTGGTCACCGTGGAAACGCATCTTTCGGG
CGGCTTGCCGGGTTTTACAATTGTCGGCCTCCCGGAGGCGGCGGTTAAGGAGAGCAAAGATCGCGTGCGCAGCGCTCTCC
TTAACAGTCACTTTGAATTCCCCCAACAGAGGATTACGGTCAACTTGGCGCCAGCTGATCTACCCAAAGAAGGTGGCCGC
TACGATCTGGCCATCGCACTCGGAATTCTCGCTGCCTCTGGTCAGATCCCCGATCAAACACTCGAGAACTACGAATTTAT
CGGCGAACTTGCCCTCAGTGGCGATTTACGGCGCATCCGTGGCGCCATCCCCGTGGCCATCGCCTGTGGCAACGAGAATC
GCACCCTGGTACTGCCCAGTGAAAACGCAGCGGAAGCCGCACTTAGTAAGAAGACCGACGTGCTGATTGCACCCAATTTA
TTGAGCGTGTGCGCACACCTTCACCAACGTGAGCCCTTAACCCCCCCCGAAAAACCACTCAGCCACGAGGCGTTTTATCC
CATCGATATGGCCGATGTGAAAGGCCAGGCGCAGGCCAGACGCGCACTGGAAATCGCTGCCAGCGGTGGCCACAATCTGC
TGTTTTACGGGCCACCCGGCACTGGTAAATCCATGCTGGCATCCCGTCTTCCCACCATCATGCCCCCGCTCAACGACGAC
GAAGCGCTGGAAGTCGCCGCTATCAAATCGGTCTCCAGCCACACCAGCGGCGGTGACTGGCTCGCGCGCCCATTTCGCTC
TCCCCACCACACGTCGTCTGGCGTTGCCCTTGTCGGCGGCGGCACTCACCCCCGCCCCGGCGAAATCTCGCTCTCCCACA
AGGGTGTGTTGTTTTTGGATGAGCTGCCAGAGTTTCCCCGGCAGGTGCTGGAGGTTCTCAGAGAGCCATTGGAAAGCGGC
AAGATTTGCGTCTCCCGCGCCAGTGCCCAGGTAGAGTTTCCGGCAAGATTTCAGTTAATCGCAGCGATGAATCCCTGTCC
TTGCGGATTTTTGAACGATGGCACCGGCCGTTGTCGCTGTACACCGCAGCAAATTTCGCGTTATCGGGATAAAATTTCCG
GGCCACTGCTGGATCGAATCGATTTGCAAATTCACGTGGCCAGTATTCCGCTGGAAGAACTGCAGAAAAAAGCCGAAGGT
GAAAGCAGCTGCACCATACGCAAACGGGTGATGCGCACCCGCGCCCGCCAGCTTATGCGCCAGGGCAAGCCCAACGCAGA
ACTGCAAGGCAAGGAGCTCACACGCTATTGCGATCTCGGCAAGCAGGAAGCGCAGTTACTGGCAACCGCGCTGCAACGTT
TACATTTGTCAGCGCGCGCATACGACCGTGTGCTGCGGGTTGCGCGTACCATTGCCGATATGAACGAATGCGACAAGATC
AGTACGGTTCATGTATCTGAAGCGCTCGGTTACCGCAATCTCGACCGGGCAAATGTGGAGCCAATGAAACCACGCCCCTT
GGGGGTCTCTGAGTACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.91

97.461

0.535
  comM Glaesserella parasuis strain SC1401

54.167

98.438

0.533
  comM Legionella pneumophila strain ERS1305867

53.831

96.875

0.521
  comM Legionella pneumophila str. Paris

53.831

96.875

0.521
  comM Vibrio campbellii strain DS40M4

53.307

97.461

0.52
  comM Haemophilus influenzae Rd KW20

52.883

98.242

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.548

99.023

0.461