Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   V8N34_RS08850 Genome accession   NZ_CP149804
Coordinates   1821520..1822242 (-) Length   240 a.a.
NCBI ID   WP_002938171.1    Uniprot ID   A0A116M1G6
Organism   Streptococcus suis strain YA     
Function   degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1816520..1827242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS08830 (V8N34_08830) - 1816573..1817796 (-) 1224 WP_318825351.1 cysteine desulfurase -
  V8N34_RS08835 (V8N34_08835) sufD 1817800..1819062 (-) 1263 WP_105105675.1 Fe-S cluster assembly protein SufD -
  V8N34_RS08840 (V8N34_08840) sufC 1819079..1819852 (-) 774 WP_002938165.1 Fe-S cluster assembly ATPase SufC -
  V8N34_RS08845 (V8N34_08845) - 1820351..1821523 (-) 1173 WP_029751888.1 MraY family glycosyltransferase -
  V8N34_RS08850 (V8N34_08850) mecA 1821520..1822242 (-) 723 WP_002938171.1 adaptor protein MecA Regulator
  V8N34_RS08855 (V8N34_08855) - 1822370..1823206 (-) 837 WP_012027770.1 undecaprenyl-diphosphate phosphatase -
  V8N34_RS08860 (V8N34_08860) - 1823333..1824898 (+) 1566 WP_024412905.1 ABC transporter substrate-binding protein/permease -
  V8N34_RS08865 (V8N34_08865) - 1824891..1825634 (+) 744 WP_318825350.1 amino acid ABC transporter ATP-binding protein -
  V8N34_RS08870 (V8N34_08870) - 1825759..1825968 (-) 210 WP_009910800.1 hypothetical protein -
  V8N34_RS08875 (V8N34_08875) - 1826054..1826956 (-) 903 WP_002942264.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27973.51 Da        Isoelectric Point: 4.0497

>NTDB_id=961520 V8N34_RS08850 WP_002938171.1 1821520..1822242(-) (mecA) [Streptococcus suis strain YA]
MKVKQISDSTLKITIKLDDLEERGMELSDFLIPQEKTEEFFYTVLDELDLPMTFRESGMLSFRVTPKPDRVDIFVTKSDL
DQSLNFDEFTDLSELGDVASMTPDEFFKSLEQTVREKSAPDATAVRHLEEVEQEEEADEEEQERYIYYILEFPTIEDLFT
FVGTVDYPVEESELYKMDGHYYLTVLINVENRSKQYPGYILSRMLEFTNDTKLTRPALQEHGTLMLPLAAIEELRKVPTV

Nucleotide


Download         Length: 723 bp        

>NTDB_id=961520 V8N34_RS08850 WP_002938171.1 1821520..1822242(-) (mecA) [Streptococcus suis strain YA]
ATGAAAGTAAAGCAAATTAGTGATTCGACCTTGAAAATCACTATAAAATTAGATGATTTGGAAGAGAGAGGAATGGAACT
TTCGGACTTTCTCATTCCGCAAGAAAAGACAGAGGAGTTCTTCTATACTGTTTTGGATGAATTGGATTTACCAATGACTT
TCCGAGAAAGCGGTATGCTGAGTTTTCGTGTGACTCCGAAGCCAGATCGGGTGGACATATTTGTTACCAAATCTGATTTG
GATCAGAGCTTGAATTTCGATGAATTTACAGATTTGTCGGAACTTGGTGATGTCGCAAGTATGACTCCAGATGAGTTTTT
CAAGAGTTTGGAGCAAACCGTTCGTGAGAAAAGCGCACCGGATGCAACAGCCGTTCGTCATTTGGAAGAGGTAGAGCAAG
AGGAAGAAGCAGATGAAGAGGAGCAGGAGCGCTATATTTACTATATTTTGGAATTTCCAACGATAGAGGATCTGTTTACT
TTTGTTGGTACGGTTGATTATCCAGTAGAAGAATCGGAATTATATAAAATGGATGGTCACTACTACTTGACCGTTCTTAT
CAATGTAGAAAATCGTTCCAAGCAGTATCCAGGCTACATTCTTTCAAGAATGTTGGAATTTACCAATGATACTAAGTTGA
CCAGACCTGCTTTACAAGAACACGGAACTTTGATGCTTCCGCTTGCGGCAATCGAGGAGCTTAGGAAGGTTCCGACAGTA
TGA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116M1G6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Streptococcus pneumoniae Rx1

51.639

100

0.525
  mecA Streptococcus pneumoniae D39

51.639

100

0.525
  mecA Streptococcus pneumoniae R6

51.639

100

0.525
  mecA Streptococcus pneumoniae TIGR4

51.639

100

0.525
  mecA Streptococcus mutans UA159

50

100

0.508
  mecA Streptococcus thermophilus LMD-9

47.5

100

0.475
  mecA Streptococcus thermophilus LMG 18311

47.083

100

0.471