Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V8N34_RS03550 Genome accession   NZ_CP149804
Coordinates   739815..740756 (+) Length   313 a.a.
NCBI ID   WP_024382906.1    Uniprot ID   A0AAJ2PG61
Organism   Streptococcus suis strain YA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 734815..745756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS03535 (V8N34_03535) - 735665..736702 (-) 1038 WP_044761031.1 3-deoxy-7-phosphoheptulonate synthase -
  V8N34_RS03540 (V8N34_03540) - 737002..737595 (-) 594 WP_044676675.1 DUF1361 domain-containing protein -
  V8N34_RS03545 (V8N34_03545) metG 737751..739754 (+) 2004 WP_172060089.1 methionine--tRNA ligase -
  V8N34_RS03550 (V8N34_03550) coiA 739815..740756 (+) 942 WP_024382906.1 competence protein CoiA family protein Machinery gene
  V8N34_RS03555 (V8N34_03555) pepF 740986..742788 (+) 1803 WP_172060091.1 oligoendopeptidase F Regulator
  V8N34_RS03560 (V8N34_03560) - 742790..743224 (+) 435 Protein_653 hypothetical protein -
  V8N34_RS03565 (V8N34_03565) - 743246..743794 (+) 549 WP_002938103.1 DUF6630 family protein -
  V8N34_RS03570 (V8N34_03570) - 743869..744588 (+) 720 WP_318825343.1 O-methyltransferase -
  V8N34_RS03575 (V8N34_03575) prsA 744649..745650 (+) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36329.94 Da        Isoelectric Point: 7.8956

>NTDB_id=961505 V8N34_RS03550 WP_024382906.1 739815..740756(+) (coiA) [Streptococcus suis strain YA]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNDRLALEVQCSSLPISRLQLRTQAYHEAGLQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=961505 V8N34_RS03550 WP_024382906.1 739815..740756(+) (coiA) [Streptococcus suis strain YA]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTCACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAATCTGCCCAGCACCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTCAATGATCGTCTAGCTTTGGAAGTCCA
GTGTTCCAGTCTACCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

50.962

99.681

0.508
  coiA Streptococcus pneumoniae Rx1

50.962

99.681

0.508
  coiA Streptococcus pneumoniae D39

50.962

99.681

0.508
  coiA Streptococcus pneumoniae R6

50.962

99.681

0.508
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428