Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V8N34_RS03555 Genome accession   NZ_CP149804
Coordinates   740986..742788 (+) Length   600 a.a.
NCBI ID   WP_172060091.1    Uniprot ID   A0AAJ2PGY1
Organism   Streptococcus suis strain YA     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 735986..747788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS03540 (V8N34_03540) - 737002..737595 (-) 594 WP_044676675.1 DUF1361 domain-containing protein -
  V8N34_RS03545 (V8N34_03545) metG 737751..739754 (+) 2004 WP_172060089.1 methionine--tRNA ligase -
  V8N34_RS03550 (V8N34_03550) coiA 739815..740756 (+) 942 WP_024382906.1 competence protein CoiA family protein Machinery gene
  V8N34_RS03555 (V8N34_03555) pepF 740986..742788 (+) 1803 WP_172060091.1 oligoendopeptidase F Regulator
  V8N34_RS03560 (V8N34_03560) - 742790..743224 (+) 435 Protein_653 hypothetical protein -
  V8N34_RS03565 (V8N34_03565) - 743246..743794 (+) 549 WP_002938103.1 DUF6630 family protein -
  V8N34_RS03570 (V8N34_03570) - 743869..744588 (+) 720 WP_318825343.1 O-methyltransferase -
  V8N34_RS03575 (V8N34_03575) prsA 744649..745650 (+) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -
  V8N34_RS03580 (V8N34_03580) - 745918..746403 (+) 486 WP_172078884.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69147.36 Da        Isoelectric Point: 4.5737

>NTDB_id=961506 V8N34_RS03555 WP_172060091.1 740986..742788(+) (pepF) [Streptococcus suis strain YA]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIENLYVYASMKND
QDTREGKYQEFQAKAMGLYSIFSQAFAFYEPEFMGITEEKLEAFKVEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLSYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=961506 V8N34_RS03555 WP_172060091.1 740986..742788(+) (pepF) [Streptococcus suis strain YA]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTAACCACTATTTTCCCAACCGATGAAGCCTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTCGACTCAGCGAAGAGCC
TTTTGACGATTAGCGAGACTCAGCTTGGTCTGATGCGTCGCATTGAAAATCTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGACACTCGCGAGGGAAAATACCAGGAATTTCAAGCTAAAGCAATGGGCTTGTATTCGATCTTTTCACAAGCTTTTGC
CTTCTATGAGCCTGAATTTATGGGCATTACTGAAGAGAAATTGGAAGCCTTTAAAGTAGAAGAGCCGGCTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTCTGGCAGCCAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAAGTCAAT
AACCTGAAAGCTCGTTTACGGAAGTACGACTCAGCTCGCCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTAGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTATGAAGATGCACTCAAG
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAAGATTACTCTGCTATAGTAAAAGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAATT
GGCAGGATAATTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCCCTCTTCTTGGCTGAAATTGCTTCAACTACCAACGAAAACCTTCTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAGCGCTTTGCTATTCTAAATCATTACCTAGATGGTTTCCGCGGCACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTTGCAA
ACAAGATTGTTAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAGCTACTTAAAGGCTGGTAGCTCAGATTATTCCCTC
AACGTCATTGCTAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCCCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697