Detailed information NTG0961467

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WF513_RS14530
• Genome accession: NZ_CP149803
• Coordinates: 3061791..3062660 (+)
• Length: 289 a.a.
• NCBI ID: WP_339080101.1
• Uniprot ID: -
• Organism: Pseudomonas sp. TMP9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3056791..3067660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WF513_RS14510 (WF513_14510)	tfpZ	3057310..3058083 (-)	774	WP_339080097.1	TfpX/TfpZ family type IV pilin accessory protein	-
WF513_RS14515 (WF513_14515)	pilA2	3058137..3058640 (-)	504	WP_339080098.1	pilin	Machinery gene
WF513_RS14520 (WF513_14520)	pilB	3058863..3060566 (+)	1704	WP_339080099.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WF513_RS14525 (WF513_14525)	pilC	3060570..3061787 (+)	1218	WP_339080100.1	type II secretion system F family protein	Machinery gene
WF513_RS14530 (WF513_14530)	pilD	3061791..3062660 (+)	870	WP_339080101.1	A24 family peptidase	Machinery gene
WF513_RS14535 (WF513_14535)	coaE	3063079..3063693 (+)	615	WP_339080102.1	dephospho-CoA kinase	-
WF513_RS14540 (WF513_14540)	yacG	3063690..3063890 (+)	201	WP_339080103.1	DNA gyrase inhibitor YacG	-
WF513_RS14545 (WF513_14545)	-	3063952..3064167 (-)	216	WP_339080104.1	hypothetical protein	-
WF513_RS14550 (WF513_14550)	-	3064272..3064961 (-)	690	WP_339080105.1	energy-coupling factor ABC transporter permease	-
WF513_RS14555 (WF513_14555)	-	3065106..3065735 (+)	630	WP_339080106.1	DUF1780 domain-containing protein	-
WF513_RS14560 (WF513_14560)	-	3065732..3066226 (+)	495	WP_339080107.1	MOSC domain-containing protein	-
WF513_RS14565 (WF513_14565)	-	3066288..3066461 (+)	174	WP_339080108.1	DUF3094 family protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31985.01 Da
• Isoelectric Point: 6.3212

>NTDB_id=961467 WF513_RS14530 WP_339080101.1 3061791..3062660(+) (pilD) [Pseudomonas sp. TMP9]
MSVIDFLASHVLAFVLCALLIGLLVGSFLNVVIYRLPKMMQRDWREQAREILELPGETQSEIFNLVLPNSQCPHCAHEIK
PWENIPVISYLFLRGKCASCKAPISLRYPLVELTCGVLSAYIAWHFGFTWQAGAMLVLTWGLLAMSLIDVDHQVLPDSLV
LPLLWLGLIANSFGLFTSLENALWGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSIVG
AVLGLIMLRLRNAETSAPIPFGPYLAIAGWIALLWGEQITTSYLQIAGF

Nucleotide

• Length: 870 bp

>NTDB_id=961467 WF513_RS14530 WP_339080101.1 3061791..3062660(+) (pilD) [Pseudomonas sp. TMP9]
ATGTCCGTCATCGACTTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTATGCGCGCTGCTAATCGGCTTGCTGGTCGGCAG
CTTCCTCAATGTGGTGATTTATCGCCTGCCGAAAATGATGCAACGCGATTGGCGCGAGCAGGCCCGTGAGATATTGGAAT
TACCTGGCGAAACCCAGTCTGAAATATTCAACTTAGTACTGCCTAATTCGCAGTGCCCACACTGCGCCCACGAAATAAAG
CCATGGGAAAATATCCCGGTTATCAGTTATCTGTTTTTGCGCGGCAAATGCGCCAGCTGCAAAGCGCCGATCAGCCTGCG
ATACCCGCTGGTTGAGCTGACCTGCGGTGTGCTATCGGCTTATATCGCCTGGCATTTCGGTTTTACCTGGCAGGCCGGCG
CGATGCTGGTGCTGACTTGGGGTTTGCTGGCGATGAGCTTGATCGATGTTGATCATCAAGTGTTGCCGGACTCATTGGTA
TTGCCGCTGCTGTGGCTTGGTTTGATTGCCAATAGCTTTGGTTTGTTTACCAGCTTGGAAAATGCACTCTGGGGCGCGGT
TGCGGGTTACCTGAGCTTATGGTCGGTGTATTGGCTGTTTAAGCTGGTGACGGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAACTACTGGCCATGCTGGGCGCGTGGGGCGGCTGGCAGGTCTTGCCGCTGACCATCCTGCTGTCCTCAATTGTCGGT
GCGGTACTAGGCCTGATTATGCTCCGCCTGCGCAACGCCGAAACCAGCGCGCCCATCCCCTTCGGCCCCTACCTAGCTAT
AGCCGGCTGGATTGCCCTGCTCTGGGGCGAGCAAATCACCACCAGCTACCTGCAGATAGCTGGTTTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.678	94.464	0.526
pilD	Vibrio campbellii strain DS40M4	54.945	94.464	0.519
pilD	Acinetobacter baumannii D1279779	50.877	98.616	0.502
pilD	Acinetobacter nosocomialis M2	50.175	98.616	0.495
pilD	Neisseria gonorrhoeae MS11	51.331	91.003	0.467