Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS54_RS11180 | Genome accession | NZ_CP149719 |
| Coordinates | 2517643..2518689 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322HCD0102 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2469849..2547061 | 2517643..2518689 | within | 0 |
Gene organization within MGE regions
Location: 2469849..2547061
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS54_RS10960 (WIS54_10960) | - | 2472821..2473804 (-) | 984 | WP_003438452.1 | phage tail protein | - |
| WIS54_RS10965 (WIS54_10965) | - | 2473805..2474503 (-) | 699 | WP_003438451.1 | putative phage tail protein | - |
| WIS54_RS10970 (WIS54_10970) | - | 2474500..2475552 (-) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIS54_RS10975 (WIS54_10975) | - | 2475545..2475973 (-) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| WIS54_RS10980 (WIS54_10980) | - | 2475973..2476299 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIS54_RS10985 (WIS54_10985) | - | 2476315..2477844 (-) | 1530 | WP_003438440.1 | NlpC/P60 family protein | - |
| WIS54_RS10990 (WIS54_10990) | - | 2478126..2478548 (-) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIS54_RS10995 (WIS54_10995) | - | 2478548..2481001 (-) | 2454 | WP_003438437.1 | hypothetical protein | - |
| WIS54_RS11000 (WIS54_11000) | - | 2481001..2481168 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS54_RS11005 (WIS54_11005) | - | 2481195..2481641 (-) | 447 | WP_003419647.1 | phage portal protein | - |
| WIS54_RS11010 (WIS54_11010) | - | 2481755..2482183 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS54_RS11015 (WIS54_11015) | - | 2482197..2483261 (-) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS54_RS11020 (WIS54_11020) | - | 2483266..2483709 (-) | 444 | WP_003438413.1 | DUF6838 family protein | - |
| WIS54_RS11025 (WIS54_11025) | - | 2483958..2484398 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS54_RS11030 (WIS54_11030) | - | 2484503..2484700 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS54_RS11035 (WIS54_11035) | - | 2484869..2485189 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS54_RS11040 (WIS54_11040) | - | 2485271..2485777 (+) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIS54_RS11045 (WIS54_11045) | - | 2486478..2487233 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS54_RS11050 (WIS54_11050) | - | 2487376..2487804 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS54_RS11055 (WIS54_11055) | - | 2488225..2488425 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS54_RS11060 (WIS54_11060) | - | 2488608..2489762 (-) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIS54_RS11065 (WIS54_11065) | - | 2490013..2490834 (+) | 822 | WP_003438396.1 | pyridoxamine kinase | - |
| WIS54_RS11070 (WIS54_11070) | - | 2490910..2492298 (-) | 1389 | WP_021368953.1 | two-component system sensor histidine kinase | - |
| WIS54_RS11075 (WIS54_11075) | - | 2492433..2493191 (-) | 759 | WP_021363441.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS54_RS11080 (WIS54_11080) | - | 2493193..2493909 (-) | 717 | WP_003438387.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS54_RS11085 (WIS54_11085) | - | 2493911..2494618 (-) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS54_RS11090 (WIS54_11090) | - | 2494734..2495270 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| WIS54_RS11095 (WIS54_11095) | - | 2495372..2496442 (-) | 1071 | WP_003438380.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS54_RS11100 (WIS54_11100) | - | 2496435..2497493 (-) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS54_RS11105 (WIS54_11105) | - | 2497480..2497812 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS54_RS11110 (WIS54_11110) | - | 2498011..2499132 (+) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIS54_RS11115 (WIS54_11115) | - | 2499260..2501158 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIS54_RS11120 (WIS54_11120) | - | 2501473..2502249 (+) | 777 | WP_003438370.1 | 3'-5' exonuclease | - |
| WIS54_RS11125 (WIS54_11125) | - | 2502341..2503093 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS54_RS11130 (WIS54_11130) | galT | 2503254..2504204 (-) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS54_RS11135 (WIS54_11135) | - | 2504589..2505785 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS54_RS11140 (WIS54_11140) | - | 2506120..2506572 (-) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS54_RS11145 (WIS54_11145) | purB | 2506883..2508328 (-) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| WIS54_RS11150 (WIS54_11150) | - | 2508472..2509380 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS54_RS11155 (WIS54_11155) | - | 2509637..2510461 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS54_RS11160 (WIS54_11160) | lepB | 2510501..2511031 (+) | 531 | WP_009902411.1 | signal peptidase I | - |
| WIS54_RS11165 (WIS54_11165) | - | 2511113..2512894 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS54_RS11170 (WIS54_11170) | - | 2513276..2515612 (-) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| WIS54_RS11175 (WIS54_11175) | rny | 2515926..2517467 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS54_RS11180 (WIS54_11180) | recA | 2517643..2518689 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS54_RS11185 (WIS54_11185) | pgsA | 2518977..2519519 (-) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS54_RS11190 (WIS54_11190) | rimO | 2519506..2520840 (-) | 1335 | WP_003438333.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS54_RS11195 (WIS54_11195) | mnmH | 2520834..2521892 (-) | 1059 | WP_003438330.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS54_RS11200 (WIS54_11200) | - | 2521895..2524306 (-) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS54_RS11205 (WIS54_11205) | - | 2524429..2525163 (-) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS54_RS11210 (WIS54_11210) | dapG | 2525276..2526499 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS54_RS11215 (WIS54_11215) | - | 2526509..2526754 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS54_RS11220 (WIS54_11220) | - | 2526789..2528036 (-) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS54_RS11225 (WIS54_11225) | - | 2528194..2528937 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS54_RS11230 (WIS54_11230) | pnp | 2529203..2531314 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS54_RS11235 (WIS54_11235) | - | 2531439..2532284 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS54_RS11240 (WIS54_11240) | rpsO | 2532524..2532781 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS54_RS11245 (WIS54_11245) | - | 2532885..2533814 (-) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS54_RS11250 (WIS54_11250) | truB | 2533945..2534850 (-) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS54_RS11255 (WIS54_11255) | - | 2534863..2535846 (-) | 984 | WP_003438308.1 | bifunctional oligoribonuclease/PAP phosphatase NrnA | - |
| WIS54_RS11260 (WIS54_11260) | rbfA | 2535827..2536207 (-) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS54_RS11265 (WIS54_11265) | infB | 2536250..2538190 (-) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| WIS54_RS11270 (WIS54_11270) | - | 2538212..2538523 (-) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS54_RS11275 (WIS54_11275) | - | 2538513..2538794 (-) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS54_RS11280 (WIS54_11280) | nusA | 2538801..2539955 (-) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS54_RS11285 (WIS54_11285) | rimP | 2539985..2540446 (-) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| WIS54_RS11290 (WIS54_11290) | - | 2540650..2544948 (-) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| WIS54_RS11295 (WIS54_11295) | acd | 2545163..2546986 (-) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=960982 WIS54_RS11180 WP_003428218.1 2517643..2518689(-) (recA) [Clostridioides difficile strain Z1322HCD0102]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=960982 WIS54_RS11180 WP_003428218.1 2517643..2518689(-) (recA) [Clostridioides difficile strain Z1322HCD0102]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.