Detailed information NTG0960089

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: WIN67_RS29910
• Genome accession: NZ_CP149586
• Coordinates: 6583463..6584956 (+)
• Length: 497 a.a.
• NCBI ID: WP_339070407.1
• Uniprot ID: -
• Organism: Pseudomonas idahonensis strain BIM B-1906
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6578463..6589956

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WIN67_RS29880 (WIN67_29880)	-	6579008..6579712 (+)	705	WP_268561852.1	HAD-IA family hydrolase	-
WIN67_RS29885 (WIN67_29885)	sutA	6579837..6580160 (-)	324	WP_007926654.1	transcriptional regulator SutA	-
WIN67_RS29890 (WIN67_29890)	-	6580263..6580688 (-)	426	WP_102862235.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
WIN67_RS29895 (WIN67_29895)	-	6580898..6582235 (-)	1338	WP_102881269.1	ammonium transporter	-
WIN67_RS29900 (WIN67_29900)	glnK	6582269..6582607 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
WIN67_RS29905 (WIN67_29905)	-	6583024..6583284 (+)	261	WP_072451854.1	accessory factor UbiK family protein	-
WIN67_RS29910 (WIN67_29910)	comM	6583463..6584956 (+)	1494	WP_339070407.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
WIN67_RS29915 (WIN67_29915)	-	6584961..6586175 (-)	1215	WP_102862238.1	aldose 1-epimerase family protein	-
WIN67_RS29920 (WIN67_29920)	-	6586289..6586867 (-)	579	WP_102881272.1	TetR family transcriptional regulator C-terminal domain-containing protein	-
WIN67_RS29925 (WIN67_29925)	-	6586981..6587907 (+)	927	WP_170002931.1	ABC transporter six-transmembrane domain-containing protein	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 53476.42 Da
• Isoelectric Point: 8.2736

>NTDB_id=960089 WIN67_RS29910 WP_339070407.1 6583463..6584956(+) (comM) [Pseudomonas idahonensis strain BIM B-1906]
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFNFPPRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALALDNIECLGELALSGEVRAVRGVLPAALAARKAGRTLLVPRANAEEACLASGLEVIAVDHL
LEAVAHFNGHAPLPPYVSDGLQENHTPYPDLREVQGQLAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIQSVSSHKPLRHWPQRPFRQPHHSASGPALVGGGSKPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIVIARARDRLQFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPEPQP
GDDSASAAARVAQARELQRQRQGCANAHLDLPGLRRHCRLSTADERWLEAACERLDLSLRAAHRLMKVARTLADLEQAAR
INREHLAEALHYRPSTG

Nucleotide

• Length: 1494 bp

>NTDB_id=960089 WIN67_RS29910 WP_339070407.1 6583463..6584956(+) (comM) [Pseudomonas idahonensis strain BIM B-1906]
ATGTCCCTGGCAATCATCCACAGCCGTGCCCAAGTGGGCGTACAGGCTCCGGCTGTCAGCGTTGAAGTGCACCTGGCCAA
CGGCCTGCCGAGCCTGACCCTGGTCGGACTGCCGGAAGCCGCAGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCC
TCAACGCCGGATTCAACTTCCCGCCGCGACGCATCACCCTCAACCTGGCACCCGCGGACTTGCCCAAGGACGGTGGACGA
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAGCGTGCAGGTGCCGGCCCTGGCGCTGGACAACATCGAATGCCT
GGGTGAGCTGGCCTTGTCCGGCGAGGTGCGAGCGGTGCGCGGTGTGCTCCCGGCCGCGCTGGCGGCACGCAAGGCCGGAC
GCACCCTGCTGGTGCCCCGGGCCAATGCCGAGGAAGCCTGCCTGGCCTCGGGCCTGGAGGTGATCGCCGTAGACCATCTG
CTGGAGGCCGTCGCCCACTTCAATGGGCACGCCCCCCTTCCGCCTTACGTCAGCGACGGCTTGCAGGAGAATCACACGCC
CTACCCCGACCTGCGGGAAGTCCAGGGCCAACTGGCTGCCAAGCGTGCCCTGCTGGTCGCTGCCGCCGGTGCCCATAACC
TGCTGTTCAGCGGCCCGCCCGGCACCGGCAAGACCTTGCTGGCCAGTCGCTTGCCCGGCCTGCTGCCACCCTTGCAGGAA
GACGAAGCCCTGGAAGTCGCAGCCATTCAATCGGTGAGCAGCCACAAGCCGCTGCGCCACTGGCCGCAGCGCCCCTTCCG
CCAGCCCCATCATTCGGCATCAGGCCCTGCACTGGTGGGTGGCGGTTCGAAACCTCGTCCGGGAGAAATCACCTTGGCCC
ATCACGGTGTGTTGTTTCTCGATGAACTGCCGGAGTTCGACCGCAAGGTCCTGGAGGTTCTGCGCGAGCCCATGGAGTCG
GGCCAGATCGTCATCGCGCGCGCCCGCGACCGGCTACAGTTTCCGGCGCGCTTCCAACTGGTAGCCGCCATGAACCCCTG
CCCCTGTGGCTACCTTGGCGACCCCAACGGACGGTGCCGCTGCACACCGGAACAGATCCAGCGCTATCGCAACAAGCTGT
CCGGCCCCTTGCTCGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAAGCCACCGCCCTGAACCCCGAGCCGCAACCG
GGGGACGACAGTGCCAGTGCCGCCGCTCGGGTGGCTCAAGCTCGCGAGCTGCAACGGCAACGCCAGGGTTGCGCCAATGC
CCATCTCGACCTCCCCGGTCTGAGGCGCCATTGCCGGCTATCCACGGCAGACGAACGCTGGCTGGAGGCGGCCTGCGAAC
GCCTGGACCTGTCGCTACGAGCCGCCCACCGCCTGATGAAAGTGGCCCGGACCCTGGCCGACCTGGAGCAGGCGGCACGG
ATCAACCGCGAGCATCTGGCAGAAGCCCTGCATTACCGGCCGAGCACAGGTTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-493)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	56.162	99.598	0.559
comM	Vibrio cholerae strain A1552	55.152	99.598	0.549
comM	Glaesserella parasuis strain SC1401	54.6	100	0.549
comM	Haemophilus influenzae Rd KW20	54.491	100	0.549
comM	Legionella pneumophila str. Paris	50.1	100	0.503
comM	Legionella pneumophila strain ERS1305867	50.1	100	0.503
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.841	100	0.455