Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WDB70_RS13600 Genome accession   NZ_CP149514
Coordinates   2766777..2768303 (-) Length   508 a.a.
NCBI ID   WP_406665244.1    Uniprot ID   -
Organism   Gallaecimonas sp. GXIMD1310 strain aegiceras     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2761777..2773303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDB70_RS13580 (WDB70_13575) speA 2761941..2763845 (-) 1905 WP_406668109.1 biosynthetic arginine decarboxylase -
  WDB70_RS13585 (WDB70_13580) speE 2763980..2764840 (+) 861 WP_406665238.1 polyamine aminopropyltransferase -
  WDB70_RS13590 (WDB70_13585) - 2764913..2765551 (+) 639 WP_406665240.1 nicotinamidase -
  WDB70_RS13595 (WDB70_13590) pncB 2765554..2766780 (+) 1227 WP_406665242.1 nicotinate phosphoribosyltransferase -
  WDB70_RS13600 (WDB70_13595) comM 2766777..2768303 (-) 1527 WP_406665244.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WDB70_RS13605 (WDB70_13600) - 2768349..2772629 (+) 4281 WP_406665246.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54446.44 Da        Isoelectric Point: 8.0189

>NTDB_id=959870 WDB70_RS13600 WP_406665244.1 2766777..2768303(-) (comM) [Gallaecimonas sp. GXIMD1310 strain aegiceras]
MALATLFCRAQLGMDAPLVTIEVDIGNGLPAFALVGLPEASVREARERVRSAILNAGFEFPAKRITVNLAPAELPKDGGR
FDLALAVGILCASGQLPDSALGNYEFYGELALSGQLRPCAGLLPALLACKQAGRQAFFATDNSPEAQLLTDLQGYGAATL
LAVCAHLAGQQPLAAIVTGQRSDARAQQAALPSLNDVVGQSQAKRALLVAAAGGHHLLFIGPPGTGKSMLARRLPGLLPV
LDEQSAQESAAVHSLAGKPRDSASWRQPPWRSPHHTASAVALVGGGSVPRPGEISLAHCGVLFLDELAEYDRRVLDCLRE
PLESGEVSISRAANQARFPARFQLLAAANPCPCGHFGNPRRACRCTPEQIRRYLGKLSGPFLDRIDLQVEVAMLPPGSLS
QQQPEGPDLLELQAKVQRCQQRQRARQGCLNAQLEGDAFRQACRLPADLANWYDSTLQQLGLSARVHQKLLKVARTLADW
QNAEYISQAHLAEAMQYRAMDRLLAGLH

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=959870 WDB70_RS13600 WP_406665244.1 2766777..2768303(-) (comM) [Gallaecimonas sp. GXIMD1310 strain aegiceras]
ATGGCTTTAGCAACGCTTTTTTGTCGCGCGCAACTGGGCATGGATGCGCCACTGGTCACAATCGAGGTTGATATTGGCAA
TGGTTTGCCTGCTTTTGCGCTGGTTGGGCTGCCGGAAGCCAGTGTTCGCGAAGCGCGGGAACGGGTGCGTTCGGCCATTC
TCAATGCCGGTTTTGAATTCCCTGCTAAACGGATCACCGTCAATCTGGCGCCCGCAGAATTGCCCAAAGACGGTGGCCGC
TTTGATTTAGCTCTGGCTGTGGGGATCCTGTGCGCCTCTGGGCAACTTCCCGATAGCGCCCTCGGCAATTACGAGTTTTA
TGGTGAGCTGGCGCTGTCCGGGCAATTACGGCCCTGTGCCGGGTTATTACCGGCACTACTGGCCTGCAAGCAGGCGGGGC
GTCAGGCTTTTTTTGCTACCGATAACAGCCCTGAGGCGCAATTACTGACCGATTTACAGGGCTACGGAGCGGCGACGTTA
TTAGCCGTTTGTGCTCATTTGGCCGGGCAGCAGCCGCTGGCGGCGATCGTAACCGGCCAGCGCTCGGACGCTCGTGCTCA
GCAGGCTGCGTTGCCGTCCCTTAACGACGTGGTGGGGCAGTCGCAGGCCAAGCGAGCCTTGCTGGTGGCGGCTGCCGGTG
GCCACCACTTGTTGTTTATTGGGCCGCCGGGTACCGGTAAAAGTATGCTGGCGCGGCGCTTGCCCGGGCTGTTACCGGTG
CTGGATGAGCAATCAGCACAAGAAAGCGCAGCAGTGCATTCTTTGGCCGGTAAGCCCCGTGACAGTGCCAGCTGGCGGCA
GCCACCGTGGCGTTCGCCACACCATACGGCGTCGGCGGTAGCACTGGTGGGCGGCGGCTCCGTACCTCGGCCAGGGGAAA
TTTCTTTGGCGCACTGCGGTGTGTTGTTTCTTGACGAACTGGCCGAGTATGACCGGCGAGTTCTGGATTGTTTGCGTGAG
CCACTGGAAAGCGGTGAAGTCAGCATCAGCCGCGCGGCCAATCAGGCCCGTTTCCCAGCCCGTTTTCAGTTGTTGGCAGC
AGCTAACCCCTGCCCCTGCGGCCATTTTGGTAATCCGCGACGAGCTTGTCGGTGCACTCCGGAACAGATCCGTCGTTATC
TGGGCAAGTTATCCGGGCCCTTTTTGGACCGTATTGACCTGCAGGTAGAAGTGGCGATGCTGCCGCCAGGCAGCCTCAGC
CAGCAACAGCCAGAGGGCCCGGATCTACTGGAACTACAAGCCAAAGTTCAACGCTGCCAGCAGCGCCAGCGAGCGCGCCA
GGGGTGCCTCAATGCCCAGCTGGAAGGAGACGCTTTTCGCCAGGCCTGCCGGTTACCAGCGGATCTTGCCAACTGGTACG
ACAGTACCTTGCAGCAGCTTGGGCTGTCAGCGCGGGTGCATCAGAAATTGCTGAAAGTGGCCCGTACCCTGGCTGACTGG
CAAAACGCTGAGTACATCAGCCAGGCGCACCTGGCTGAAGCCATGCAGTATCGGGCCATGGATCGCTTGCTGGCGGGCCT
GCACTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-138)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.456

100

0.526
  comM Glaesserella parasuis strain SC1401

50.881

100

0.512
  comM Vibrio cholerae strain A1552

51.282

99.803

0.512
  comM Vibrio campbellii strain DS40M4

51.181

100

0.512
  comM Legionella pneumophila str. Paris

47.222

99.213

0.469
  comM Legionella pneumophila strain ERS1305867

47.222

99.213

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.828

99.803

0.407