Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WJ127_RS22785 Genome accession   NZ_CP149468
Coordinates   4699976..4701496 (+) Length   506 a.a.
NCBI ID   WP_023258132.1    Uniprot ID   A0A3V5VY70
Organism   Salmonella enterica strain 2024CK-1945744     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4694976..4706496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ127_RS22760 (WJ127_22715) ilvE 4696533..4697462 (-) 930 WP_000208532.1 branched-chain-amino-acid transaminase -
  WJ127_RS22765 (WJ127_22720) ilvM 4697480..4697743 (-) 264 WP_000983260.1 acetolactate synthase 2 small subunit -
  WJ127_RS22770 (WJ127_22725) ilvG 4697740..4699386 (-) 1647 WP_023218501.1 acetolactate synthase 2 catalytic subunit -
  WJ127_RS22775 (WJ127_22730) ilvX 4699389..4699439 (-) 51 WP_192930503.1 peptide IlvX -
  WJ127_RS22780 (WJ127_22735) ilvL 4699526..4699624 (-) 99 WP_001311244.1 ilv operon leader peptide -
  WJ127_RS22785 (WJ127_22740) comM 4699976..4701496 (+) 1521 WP_023258132.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WJ127_RS22790 (WJ127_22745) maoP 4701521..4701859 (-) 339 WP_000840996.1 macrodomain Ori organization protein MaoP -
  WJ127_RS22795 (WJ127_22750) hdfR 4701966..4702814 (+) 849 WP_001541181.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55070.26 Da        Isoelectric Point: 8.4881

>NTDB_id=959318 WJ127_RS22785 WP_023258132.1 4699976..4701496(+) (comM) [Salmonella enterica strain 2024CK-1945744]
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ENSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELTDQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=959318 WJ127_RS22785 WP_023258132.1 4699976..4701496(+) (comM) [Salmonella enterica strain 2024CK-1945744]
ATGTCACTGGCGATTGTTCATACCCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGTTTACCGGGACTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGATCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGCGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGGCCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACAGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAGGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATCAGCAAAGAAGGATGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGCCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGGCATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTCTTCCACCATTAAGCAATGAA
GAGGCGTTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGCCCCTTTCG
CTCACCTCATCATAGCGCCTCACTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCGGGAGAGATATCGCTGGCGC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAGCGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGTCAAATTCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCCAGGTTCCAGTTAATCGCCGCAATGAATCCCAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACACTACGTTACCTTAATAGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGATACCGCTTCCTCCGCCCGGGATTCTTAGCCAACACGCCTCAAAGGGT
GAGAACAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGCCAGAAGAAGTTAAACGCGCG
TCTGGAGGGTCGCGAAATCCAAAAATACTGTGTTTTGCATCACGATGACGCCCGCTGGCTTGAAGACACGCTGGTGCATC
TTGGATTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTGGCCAGAACCATTGCCGACATAGAACTGACTGACCAGATC
TCACGTCAGCATTTGCAGGAAGCGGTAAGCTATCGGGCGATAGACAGGTTGTTAATTCATTTGCAAAAGCTGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3V5VY70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Vibrio cholerae strain A1552

58.614

99.802

0.585
  comM Glaesserella parasuis strain SC1401

58.153

100

0.585
  comM Vibrio campbellii strain DS40M4

57.341

99.605

0.571
  comM Legionella pneumophila str. Paris

47.686

98.221

0.468
  comM Legionella pneumophila strain ERS1305867

47.686

98.221

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

100

0.429