Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WAC29_RS07845 Genome accession   NZ_CP149436
Coordinates   1601659..1603179 (+) Length   506 a.a.
NCBI ID   WP_339027142.1    Uniprot ID   -
Organism   Leclercia pneumoniae strain 49125     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1596659..1608179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAC29_RS07825 (WAC29_07825) - 1598226..1599155 (-) 930 WP_040078063.1 branched-chain amino acid transaminase -
  WAC29_RS07830 (WAC29_07830) ilvM 1599173..1599436 (-) 264 WP_040078062.1 acetolactate synthase 2 small subunit -
  WAC29_RS07835 (WAC29_07835) ilvG 1599433..1601079 (-) 1647 WP_339027138.1 acetolactate synthase 2 catalytic subunit -
  WAC29_RS07840 (WAC29_07840) ilvL 1601219..1601317 (-) 99 WP_040090233.1 ilv operon leader peptide -
  WAC29_RS07845 (WAC29_07845) comM 1601659..1603179 (+) 1521 WP_339027142.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WAC29_RS07850 (WAC29_07850) - 1603203..1603541 (-) 339 WP_040078058.1 DUF413 domain-containing protein -
  WAC29_RS07855 (WAC29_07855) hdfR 1603630..1604481 (+) 852 WP_172657828.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55077.46 Da        Isoelectric Point: 8.0536

>NTDB_id=959055 WAC29_RS07845 WP_339027142.1 1601659..1603179(+) (comM) [Leclercia pneumoniae strain 49125]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLTASEQLSAPRLGHYEFVGELALTGALRGVPGAISGAIAALNAGREIIVATDNAAEVSLIEQKGCLVAGHL
QEVCAFLEGKHQLAEPEPVPFSAEPESNDINDIIGQEHGKRALEITAAGSHNLLLIGPPGTGKTMLASRLNGLLPPLSNH
EALESAAIISLVNASSLHKQWRMRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GQINISRTRAKIAYPARFQLIAAMNPSPTGHYQGQHNRCTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGLLCQMHKTG
EDSTTVRKRVMAAQGTQMARQNKLNAHLDNAEIRRFCQLEAEDAKWLEETLTRFGLSVRAWQRLLKVARTIADLEKCLNI
ERRHLQEALGYRAIDRLLQHLQKMLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=959055 WAC29_RS07845 WP_339027142.1 1601659..1603179(+) (comM) [Leclercia pneumoniae strain 49125]
ATGTCATTGTCGGTTGTTTACACGCGTGCGGCGTTAGGGGTAAAAGCGCCGCTCATTTCTGTTGAAGTGCATCTGAGTAA
TGGGCTTCCGGGGCTGACCCTGGTGGGTCTACCGGAAACCACCGTTAAGGAGGCAAGAGACCGGGTACGCAGCGCGATTA
TCAACAGCGGTTATACCTTTCCGGCAAAGAAAATCACCATCAACCTCGCCCCTGCGGATTTACCCAAAGAGGGAGGGCGA
TACGATTTACCTATCGCTATTGCGCTTCTCACTGCGTCTGAGCAGCTCTCTGCACCCCGTCTGGGTCATTACGAGTTTGT
GGGTGAACTGGCCCTTACAGGCGCGTTGAGAGGGGTTCCAGGTGCAATATCCGGTGCAATCGCAGCGCTTAATGCTGGTC
GGGAGATTATCGTCGCGACCGATAATGCAGCAGAAGTCAGTCTTATCGAGCAGAAAGGCTGCCTGGTCGCGGGGCATTTA
CAGGAGGTCTGCGCCTTCCTGGAAGGGAAACATCAGCTGGCCGAGCCCGAGCCGGTGCCCTTTTCTGCCGAGCCTGAATC
AAATGATATCAATGATATTATTGGCCAGGAGCATGGCAAGCGCGCCCTCGAGATCACCGCGGCTGGCTCTCATAATCTCT
TGCTCATTGGTCCTCCGGGTACAGGAAAGACCATGCTTGCCAGTCGGCTGAATGGACTGTTACCGCCGCTGAGTAATCAT
GAAGCTCTGGAAAGCGCAGCGATTATTAGCCTTGTCAATGCCAGCTCTCTGCATAAACAGTGGCGTATGCGCCCGTTCCG
CGCACCACATCATAGCGCCTCGCTGGCGGCCATGGTGGGAGGTGGTTCTATTCCGGCTCCCGGCGAGATTTCGCTGGCTC
ACAATGGCATTCTTTTTCTGGATGAGCTGCCAGAGTTTGAGCGACGGGTGCTTGATGCCCTGCGAGAGCCTATTGAGTCA
GGCCAGATCAATATCTCCCGCACGCGCGCAAAGATAGCGTATCCGGCCCGTTTTCAGCTGATTGCAGCGATGAATCCCAG
TCCGACAGGACACTATCAGGGTCAACACAATCGCTGCACGCCAGAGCAGACGTTGCGCTATCTGTCGCGGCTGTCCGGCC
CTTTTCTCGACAGGTTTGATTTATCTCTGGAGATCCCCCTGCCGCCGCCAGGGCTGCTTTGCCAGATGCACAAAACGGGA
GAGGACAGCACGACCGTGCGGAAAAGGGTCATGGCGGCACAGGGCACGCAAATGGCGCGGCAAAACAAACTCAACGCCCA
TCTTGATAACGCCGAGATACGCCGGTTTTGTCAGCTGGAAGCAGAAGATGCAAAATGGCTGGAGGAGACGCTTACTCGCT
TCGGTCTTTCTGTACGTGCCTGGCAGCGCCTGCTGAAGGTCGCACGCACGATTGCCGATCTGGAGAAATGTTTAAATATT
GAACGAAGGCATCTGCAGGAAGCGCTGGGCTATCGCGCCATCGACAGATTATTACAGCACTTACAAAAGATGCTGACCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.196

100

0.607
  comM Glaesserella parasuis strain SC1401

59.454

100

0.603
  comM Vibrio campbellii strain DS40M4

58.367

99.209

0.579
  comM Vibrio cholerae strain A1552

57.968

99.209

0.575
  comM Legionella pneumophila str. Paris

49.597

98.024

0.486
  comM Legionella pneumophila strain ERS1305867

49.597

98.024

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.026

100

0.433